Variant report

Variant	rs540512412
Chromosome Location	chr6:120326692-120326693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886573	chr6:120284480-120409492	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886574	chr6:120314863-120409492	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464031	chr6:120314863-120424885	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv604561	chr6:120314863-120424885	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120326200-120326800	Active TSS	HepG2	liver
2	chr6:120326400-120326800	Active TSS	Ovary	ovary
3	chr6:120326400-120326800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:120326400-120327200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:120326400-120327200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:120326400-120327200	Active TSS	Hela-S3	cervix
7	chr6:120326400-120327200	Active TSS	K562	blood
8	chr6:120326400-120327800	Active TSS	A549	lung
9	chr6:120326600-120327200	Active TSS	Placenta	Placenta
10	chr6:120326600-120327400	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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