Variant report

Variant	rs540540294
Chromosome Location	chr2:191045872-191045873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3441594	chr2:191044357-191046805	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191044400-191046000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr2:191044400-191046200	Active TSS	Brain Cingulate Gyrus	brain
3	chr2:191044600-191046000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr2:191044600-191046000	Active TSS	Fetal Lung	lung
5	chr2:191044600-191046200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr2:191044600-191046400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr2:191044600-191046400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr2:191044600-191046600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:191044800-191046000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:191044800-191046000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:191044800-191046000	Active TSS	Primary hematopoietic stem cells	blood
12	chr2:191044800-191046000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:191044800-191046000	Flanking Active TSS	Liver	Liver
14	chr2:191044800-191046000	Active TSS	Brain Substantia Nigra	brain
15	chr2:191044800-191046000	Bivalent Enhancer	Fetal Brain Male	brain
16	chr2:191044800-191046000	Active TSS	Fetal Kidney	kidney
17	chr2:191044800-191046000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
18	chr2:191044800-191046200	Active TSS	Aorta	Aorta
19	chr2:191044800-191046200	Active TSS	Psoas Muscle	Psoas
20	chr2:191044800-191046200	Active TSS	HSMM	muscle
21	chr2:191044800-191046400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr2:191044800-191046400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr2:191044800-191046400	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr2:191044800-191046400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:191044800-191046400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr2:191044800-191046400	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr2:191044800-191046600	Active TSS	Right Ventricle	heart
28	chr2:191044800-191047000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:191044800-191047000	Active TSS	Left Ventricle	heart
30	chr2:191044800-191048000	Active TSS	Fetal Intestine Large	intestine
31	chr2:191044800-191049000	Active TSS	Right Atrium	heart
32	chr2:191045000-191046000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:191045000-191046000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr2:191045000-191046000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr2:191045000-191046000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:191045000-191046000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr2:191045000-191046000	Active TSS	Brain Anterior Caudate	brain
38	chr2:191045000-191046000	Active TSS	HSMMtube	muscle
39	chr2:191045000-191046000	Active TSS	NHDF-Ad	bronchial
40	chr2:191045000-191046200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr2:191045000-191046200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:191045000-191046200	Active TSS	Colon Smooth Muscle	Colon
43	chr2:191045000-191046200	Active TSS	Esophagus	oesophagus
44	chr2:191045000-191046200	Active TSS	Gastric	stomach
45	chr2:191045000-191046200	Active TSS	A549	lung
46	chr2:191045000-191046400	Active TSS	Fetal Stomach	stomach
47	chr2:191045000-191046400	Active TSS	Osteobl	bone
48	chr2:191045000-191046600	Active TSS	Brain Angular Gyrus	brain
49	chr2:191045000-191046600	Active TSS	Brain Hippocampus Middle	brain
50	chr2:191045000-191046600	Active TSS	Brain Inferior Temporal Lobe	brain

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