The 2.0 version of rSNPBase

Variant report

Variant rs540545350
Chromosome Location chr1:76620896-76620897
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:76616400-76623600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
2 chr1:76619800-76621000 Enhancers Sigmoid Colon Sigmoid Colon
3 chr1:76619800-76646400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:76620200-76621000 Enhancers Esophagus oesophagus
5 chr1:76620400-76621000 Enhancers iPS-15b Cell Line embryonic stem cell
6 chr1:76620400-76621000 Active TSS Brain Substantia Nigra brain
7 chr1:76620400-76621000 Enhancers Fetal Lung lung
8 chr1:76620400-76621000 Enhancers Placenta Placenta
9 chr1:76620400-76621000 Enhancers Psoas Muscle Psoas
10 chr1:76620400-76621000 Enhancers Stomach Mucosa stomach
11 chr1:76620400-76621000 Enhancers Spleen Spleen
12 chr1:76620400-76623800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:76620400-76624000 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:76620600-76621000 Enhancers Primary B cells from peripheral blood blood
15 chr1:76620600-76621000 Enhancers Primary T cells from cord blood blood
16 chr1:76620600-76621000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr1:76620600-76621000 Enhancers Primary T helper naive cells from peripheral blood blood
18 chr1:76620600-76621000 Enhancers Primary T helper naive cells fromperipheralblood blood
19 chr1:76620600-76621000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
20 chr1:76620600-76621000 Enhancers Primary T helper cells PMA-I stimulated --
21 chr1:76620600-76621000 Enhancers Primary T killer naive cells fromperipheralblood blood
22 chr1:76620600-76621000 Enhancers Cortex derived primary cultured neurospheres brain
23 chr1:76620600-76621000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:76620600-76621000 Enhancers Brain Cingulate Gyrus brain
25 chr1:76620600-76621000 Enhancers Fetal Adrenal Gland Adrenal Gland
26 chr1:76620600-76621000 Enhancers Fetal Intestine Large intestine
27 chr1:76620600-76621000 Enhancers Fetal Intestine Small intestine
28 chr1:76620600-76621000 Enhancers Fetal Muscle Leg muscle
29 chr1:76620600-76621000 Enhancers Fetal Thymus thymus
30 chr1:76620600-76621000 Enhancers Right Atrium heart
31 chr1:76620600-76621000 Enhancers Skeletal Muscle Male skeletal muscle
32 chr1:76620600-76621000 Enhancers Thymus Thymus
33 chr1:76620600-76621000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
34 chr1:76620600-76621000 Enhancers NHDF-Ad bronchial
35 chr1:76620600-76621200 Enhancers Primary T cells fromperipheralblood blood
36 chr1:76620600-76621200 Enhancers Primary Natural Killer cells fromperipheralblood blood
37 chr1:76620600-76621600 Weak transcription Fetal Heart heart
38 chr1:76620600-76627800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr1:76620800-76621000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:76620800-76621000 Enhancers Primary neutrophils fromperipheralblood blood
41 chr1:76620800-76621000 Enhancers Primary B cells from cord blood blood
42 chr1:76620800-76621000 Enhancers Primary hematopoietic stem cells blood
43 chr1:76620800-76621000 Enhancers Primary T helper 17 cells PMA-I stimulated --
44 chr1:76620800-76621000 Enhancers Primary T helper cells fromperipheralblood blood
45 chr1:76620800-76621000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
46 chr1:76620800-76621000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr1:76620800-76621000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:76620800-76621000 Enhancers Adipose Nuclei Adipose
49 chr1:76620800-76621000 Enhancers Brain Angular Gyrus brain
50 chr1:76620800-76621000 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015