Variant report

Variant	rs540550883
Chromosome Location	chr8:124173785-124173786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124164274..124174107-chr8:124177179..124181294,15	K562	blood:
2	chr8:124171651..124174347-chr8:124191271..124192791,2	MCF-7	breast:
3	chr8:124169245..124176335-chr8:124192965..124197106,7	MCF-7	breast:
4	chr8:124168117..124171297-chr8:124171831..124175255,6	K562	blood:
5	chr8:124171432..124174128-chr8:124286899..124289260,2	MCF-7	breast:
6	chr8:124164381..124166664-chr8:124173510..124175947,2	K562	blood:
7	chr8:124171738..124174563-chr8:124175786..124180198,3	MCF-7	breast:
8	chr8:124168721..124173901-chr8:124230598..124235089,6	MCF-7	breast:
9	chr8:124171396..124176501-chr8:124228974..124234727,7	MCF-7	breast:
10	chr8:124167900..124173832-chr8:124175566..124180994,14	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165156	Chromatin interaction
ENSG00000221461	Chromatin interaction
ENSG00000147689	Chromatin interaction
ENSG00000253258	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv429939	chr8:124027819-124180819	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1028933	chr8:124065484-124181718	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv521469	chr8:124172895-124177926	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124172400-124174000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr8:124172400-124174000	Active TSS	Brain Anterior Caudate	brain
3	chr8:124172600-124173800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr8:124172600-124173800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr8:124172600-124173800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:124172600-124173800	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr8:124172600-124173800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:124172600-124173800	Active TSS	Primary T cells from cord blood	blood
9	chr8:124172600-124173800	Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr8:124172600-124173800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:124172600-124173800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:124172600-124173800	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr8:124172600-124173800	Active TSS	Brain Angular Gyrus	brain
14	chr8:124172600-124173800	Active TSS	Brain Cingulate Gyrus	brain
15	chr8:124172600-124173800	Active TSS	Brain Germinal Matrix	brain
16	chr8:124172600-124173800	Active TSS	Fetal Brain Female	brain
17	chr8:124172600-124173800	Active TSS	Fetal Kidney	kidney
18	chr8:124172600-124173800	Active TSS	Right Atrium	heart
19	chr8:124172600-124173800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr8:124172600-124173800	Active TSS	Thymus	Thymus
21	chr8:124172600-124174000	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr8:124172600-124174000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr8:124172600-124174000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr8:124172600-124174000	Active TSS	Osteobl	bone
25	chr8:124172800-124173800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:124172800-124173800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:124172800-124173800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr8:124172800-124173800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr8:124172800-124173800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr8:124172800-124173800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:124172800-124173800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr8:124172800-124173800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:124172800-124173800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:124172800-124173800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:124172800-124173800	Active TSS	Aorta	Aorta
36	chr8:124172800-124173800	Flanking Active TSS	Liver	Liver
37	chr8:124172800-124173800	Active TSS	Fetal Lung	lung
38	chr8:124172800-124173800	Flanking Active TSS	Placenta	Placenta
39	chr8:124172800-124173800	Active TSS	Lung	lung
40	chr8:124172800-124173800	Active TSS	Ovary	ovary
41	chr8:124172800-124173800	Active TSS	Psoas Muscle	Psoas
42	chr8:124172800-124173800	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr8:124172800-124173800	Flanking Active TSS	HUVEC	blood vessel
44	chr8:124172800-124173800	Active TSS	NHDF-Ad	bronchial
45	chr8:124172800-124173800	Flanking Active TSS	NHLF	lung
46	chr8:124172800-124174000	Active TSS	Duodenum Mucosa	Duodenum
47	chr8:124172800-124174000	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr8:124172800-124174000	Active TSS	HepG2	liver
49	chr8:124172800-124174000	Active TSS	Monocytes-CD14+_RO01746	blood
50	chr8:124173000-124173800	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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