Variant report

Variant	rs540563370
Chromosome Location	chr20:23643374-23643375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv458950	chr20:23642427-23721992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv585724	chr20:23642427-23721992	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv979417	chr20:23643043-23651277	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23637200-23643600	Weak transcription	Right Atrium	heart
2	chr20:23637200-23660000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:23637800-23644200	Enhancers	Fetal Intestine Large	intestine
4	chr20:23638400-23644200	Enhancers	Fetal Intestine Small	intestine
5	chr20:23639800-23643400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:23641800-23647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr20:23641800-23647200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr20:23641800-23647200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:23641800-23652200	Weak transcription	Adipose Nuclei	Adipose
10	chr20:23642400-23644800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:23642400-23649400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr20:23642600-23647000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr20:23642600-23647000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr20:23643000-23644000	Enhancers	Fetal Muscle Trunk	muscle
15	chr20:23643200-23643600	Weak transcription	Fetal Muscle Leg	muscle
16	chr20:23643200-23644200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:23643200-23646000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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