Variant report

Variant	rs540568026
Chromosome Location	chr2:100064329-100064330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100061358..100063213-chr2:100063988..100066181,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1014604	chr2:99980851-100097884	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1006625	chr2:99984550-100096371	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv874700	chr2:100062163-100099989	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1792220	chr2:100063440-100077327	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100005800-100066000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:100006000-100081200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:100021200-100077800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:100032600-100078000	Weak transcription	Psoas Muscle	Psoas
5	chr2:100034200-100088800	Weak transcription	Small Intestine	intestine
6	chr2:100036800-100074800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:100038200-100073800	Weak transcription	Esophagus	oesophagus
8	chr2:100041400-100077800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:100041600-100083400	Weak transcription	Brain Substantia Nigra	brain
10	chr2:100042800-100065000	Weak transcription	Lung	lung
11	chr2:100045400-100068200	Weak transcription	Ovary	ovary
12	chr2:100048200-100090600	Weak transcription	Stomach Mucosa	stomach
13	chr2:100048400-100067800	Weak transcription	Fetal Heart	heart
14	chr2:100048600-100068200	Weak transcription	Spleen	Spleen
15	chr2:100048800-100070400	Weak transcription	Fetal Brain Female	brain
16	chr2:100050000-100065000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:100051800-100064600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr2:100053800-100075800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:100055400-100083200	Weak transcription	Right Ventricle	heart
20	chr2:100055600-100065000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:100055600-100065000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:100055600-100065000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:100055600-100065000	Weak transcription	NH-A	brain
24	chr2:100055600-100065400	Weak transcription	Brain Germinal Matrix	brain
25	chr2:100055600-100068600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:100055600-100071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:100055600-100078200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:100055600-100079800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:100055800-100064400	Weak transcription	Colonic Mucosa	Colon
30	chr2:100055800-100065000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr2:100055800-100067800	Weak transcription	Fetal Lung	lung
32	chr2:100055800-100072200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:100055800-100072800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:100055800-100076200	Weak transcription	Aorta	Aorta
35	chr2:100055800-100076400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:100055800-100089000	Weak transcription	Pancreas	Pancrea
37	chr2:100055800-100092600	Weak transcription	Gastric	stomach
38	chr2:100056600-100091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr2:100056800-100064800	Weak transcription	Fetal Kidney	kidney
40	chr2:100057000-100065000	Weak transcription	Fetal Brain Male	brain
41	chr2:100057000-100065000	Weak transcription	A549	lung
42	chr2:100057000-100071600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr2:100057200-100064400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr2:100057200-100073000	Weak transcription	NHLF	lung
45	chr2:100057200-100076000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr2:100057400-100064600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr2:100057400-100066800	Weak transcription	Colon Smooth Muscle	Colon
48	chr2:100057400-100068200	Weak transcription	Hela-S3	cervix
49	chr2:100057400-100071600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr2:100057400-100077800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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