The 2.0 version of rSNPBase

Variant report

Variant rs540590434
Chromosome Location chr10:61570721-61570722
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:61537600-61582800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr10:61548600-61573000 Strong transcription Dnd41 blood
3 chr10:61549600-61572000 Strong transcription Liver Liver
4 chr10:61549600-61579600 Strong transcription Primary B cells from cord blood blood
5 chr10:61553000-61571000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr10:61554800-61571000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr10:61556000-61583800 Strong transcription Primary B cells from peripheral blood blood
8 chr10:61556200-61573800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr10:61556200-61573800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr10:61556200-61574800 Strong transcription Primary monocytes fromperipheralblood blood
11 chr10:61556200-61574800 Strong transcription Primary T helper cells fromperipheralblood blood
12 chr10:61556600-61573000 Strong transcription Breast Myoepithelial Primary Cells Breast
13 chr10:61556800-61574600 Strong transcription Primary T cells from cord blood blood
14 chr10:61557400-61573400 Strong transcription Adipose Nuclei Adipose
15 chr10:61557400-61574600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
16 chr10:61561000-61572800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
17 chr10:61561000-61574000 Strong transcription Primary T helper cells PMA-I stimulated --
18 chr10:61561000-61574600 Strong transcription Primary T cells fromperipheralblood blood
19 chr10:61561200-61571800 Strong transcription HSMM muscle
20 chr10:61561200-61574000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr10:61561200-61574600 Strong transcription HepG2 liver
22 chr10:61561600-61572600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
23 chr10:61561600-61572800 Strong transcription Osteobl bone
24 chr10:61561600-61573600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr10:61561800-61571600 Strong transcription Duodenum Smooth Muscle Duodenum
26 chr10:61562000-61573400 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr10:61562200-61574600 Strong transcription Fetal Thymus thymus
28 chr10:61562400-61572600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr10:61562600-61571600 Strong transcription GM12878-XiMat blood
30 chr10:61562600-61573000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr10:61562600-61573400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr10:61562800-61571600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr10:61562800-61571600 Strong transcription H9 Cell Line embryonic stem cell
34 chr10:61562800-61571600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr10:61562800-61571600 Strong transcription Sigmoid Colon Sigmoid Colon
36 chr10:61562800-61571600 Strong transcription Thymus Thymus
37 chr10:61562800-61572400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr10:61562800-61572600 Strong transcription Fetal Intestine Large intestine
39 chr10:61562800-61572600 Strong transcription HMEC breast
40 chr10:61562800-61572800 Strong transcription Primary T killer naive cells fromperipheralblood blood
41 chr10:61562800-61574200 Strong transcription Placenta Placenta
42 chr10:61562800-61574400 Strong transcription Primary T helper naive cells fromperipheralblood blood
43 chr10:61563000-61571000 Strong transcription Fetal Intestine Small intestine
44 chr10:61563000-61572800 Strong transcription Fetal Muscle Trunk muscle
45 chr10:61563200-61571600 Strong transcription Fetal Muscle Leg muscle
46 chr10:61563400-61571000 Strong transcription NHEK skin
47 chr10:61563600-61577600 Weak transcription Right Atrium heart
48 chr10:61564200-61576800 Strong transcription Monocytes-CD14+_RO01746 blood
49 chr10:61565000-61571000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr10:61565000-61572800 Strong transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015