Variant report

Variant	rs540602335
Chromosome Location	chr13:84695981-84695982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047488	chr13:84629304-84696148	Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv562557	chr13:84695884-84714655	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84693600-84700600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:84695400-84696000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:84695400-84696000	Enhancers	NHEK	skin
4	chr13:84695400-84696200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:84695400-84696200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:84695400-84696200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:84695400-84696600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:84695400-84696600	Enhancers	Dnd41	blood
9	chr13:84695600-84696000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:84695600-84696000	Enhancers	Brain Germinal Matrix	brain
11	chr13:84695600-84696000	Enhancers	HMEC	breast
12	chr13:84695600-84696200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:84695800-84696200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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