Variant report

Variant	rs540622509
Chromosome Location	chr11:72050794-72050795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72049854..72052109-chr11:72063965..72066307,2	MCF-7	breast:
2	chr11:72047915..72051506-chr11:72051775..72054985,4	K562	blood:
3	chr11:72048175..72050964-chr11:72057848..72059463,2	K562	blood:

Variant related genes	Relation type
ENSG00000255672	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	nsv983040	chr11:72049072-72051192	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:72025600-72054000	Weak transcription	GM12878-XiMat	blood
3	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:72027600-72060600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:72028400-72060800	Weak transcription	Gastric	stomach
6	chr11:72030600-72060200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:72032800-72054600	Weak transcription	Brain Anterior Caudate	brain
8	chr11:72033000-72075600	Weak transcription	A549	lung
9	chr11:72033200-72063800	Weak transcription	Aorta	Aorta
10	chr11:72038200-72071200	Weak transcription	HMEC	breast
11	chr11:72038400-72053600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:72038400-72076600	Weak transcription	Liver	Liver
13	chr11:72038800-72060600	Weak transcription	Esophagus	oesophagus
14	chr11:72039400-72060400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:72039800-72077400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:72040000-72060200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:72040000-72070800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:72040400-72053800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:72040400-72060600	Weak transcription	Ovary	ovary
20	chr11:72040400-72069400	Weak transcription	Fetal Brain Female	brain
21	chr11:72040800-72070800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:72041000-72060200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:72041200-72054200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:72041400-72064600	Weak transcription	Hela-S3	cervix
25	chr11:72041600-72060600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:72041800-72060600	Weak transcription	Psoas Muscle	Psoas
27	chr11:72041800-72063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:72041800-72067400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:72041800-72072200	Weak transcription	HUVEC	blood vessel
30	chr11:72041800-72076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:72042000-72059800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:72043200-72076600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:72044800-72053400	Weak transcription	HepG2	liver
34	chr11:72044800-72063600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:72045000-72060800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:72045200-72060400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:72045600-72060600	Weak transcription	Thymus	Thymus
38	chr11:72045600-72061000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:72045600-72065200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:72045800-72054000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:72045800-72065600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:72046000-72052000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:72046000-72066200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:72046000-72074200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:72046200-72067800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:72046400-72051600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:72046400-72053800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:72047200-72060600	Weak transcription	Lung	lung
50	chr11:72047200-72065600	Weak transcription	Stomach Smooth Muscle	stomach

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