Variant report

Variant	rs540643092
Chromosome Location	chr11:34197408-34197409
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34192703..34198960-chr11:34377862..34381176,7	MCF-7	breast:
2	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
3	chr11:34071760..34074563-chr11:34194562..34197437,2	MCF-7	breast:
4	chr11:34195960..34197951-chr11:34375178..34377158,2	MCF-7	breast:
5	chr11:34185403..34188000-chr11:34196564..34198750,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523431	chr11:34192092-34199849	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv517429	chr11:34196484-34199849	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
2	chr11:34192800-34203000	Weak transcription	Aorta	Aorta
3	chr11:34193800-34198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:34196200-34198000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:34196200-34198800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:34196200-34199000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34196200-34207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:34196400-34197600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:34196400-34197600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:34196400-34198800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:34196400-34199200	Enhancers	A549	lung
12	chr11:34196400-34203400	Weak transcription	Fetal Brain Male	brain
13	chr11:34196400-34206800	Weak transcription	Gastric	stomach
14	chr11:34196400-34207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:34196600-34197800	Weak transcription	HMEC	breast
16	chr11:34196600-34198000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:34196600-34198000	Weak transcription	Brain Anterior Caudate	brain
18	chr11:34196600-34198000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:34196600-34201400	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:34196600-34201600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:34196600-34201800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:34196600-34201800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:34196600-34201800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:34196600-34203000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:34196600-34204400	Weak transcription	HSMM	muscle
26	chr11:34196600-34204800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:34196600-34205800	Weak transcription	Fetal Brain Female	brain
28	chr11:34196600-34206000	Weak transcription	Pancreas	Pancrea
29	chr11:34196600-34206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:34196600-34207600	Weak transcription	Left Ventricle	heart
31	chr11:34196600-34210200	Weak transcription	HepG2	liver
32	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
33	chr11:34196800-34197800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:34196800-34197800	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:34196800-34198000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:34196800-34198000	Weak transcription	Brain Germinal Matrix	brain
37	chr11:34196800-34198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:34196800-34198000	Weak transcription	Brain Substantia Nigra	brain
39	chr11:34196800-34198000	Weak transcription	Fetal Stomach	stomach
40	chr11:34196800-34198600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:34196800-34198600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:34196800-34200800	Weak transcription	Brain Angular Gyrus	brain
43	chr11:34196800-34201800	Weak transcription	Hela-S3	cervix
44	chr11:34196800-34203200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:34196800-34205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:34196800-34206800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:34197000-34198000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:34197000-34198200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:34197000-34198600	Weak transcription	NH-A	brain
50	chr11:34197000-34207400	Weak transcription	HSMMtube	muscle

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