Variant report

Variant	rs540665869
Chromosome Location	chr6:15736435-15736436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15691679..15692211-chr6:15736266..15736989,2	K562	blood:
2	chr6:15734164..15736445-chr6:16129728..16131234,2	MCF-7	breast:
3	chr6:15733339..15738209-chr6:16127623..16132643,9	K562	blood:
4	chr6:15733392..15737807-chr6:16127623..16131334,6	K562	blood:
5	chr6:15736277..15738090-chr6:15744197..15746726,2	K562	blood:
6	chr6:15727790..15730046-chr6:15735251..15736954,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3361903	chr6:15736223-15739621	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15733400-15737600	Enhancers	Fetal Heart	heart
2	chr6:15733800-15736800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:15733800-15736800	Enhancers	Fetal Thymus	thymus
4	chr6:15733800-15736800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:15734200-15736600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:15734800-15737600	Enhancers	Fetal Intestine Small	intestine
7	chr6:15735400-15737000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:15735600-15736800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:15735600-15737000	Enhancers	Pancreas	Pancrea
10	chr6:15735600-15737400	Enhancers	Fetal Intestine Large	intestine
11	chr6:15735800-15736600	Enhancers	Stomach Mucosa	stomach
12	chr6:15735800-15736800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:15735800-15736800	Enhancers	Gastric	stomach
14	chr6:15735800-15737000	Enhancers	GM12878-XiMat	blood
15	chr6:15735800-15737000	Flanking Active TSS	K562	blood
16	chr6:15736000-15736800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:15736000-15736800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:15736000-15736800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:15736200-15736800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:15736200-15736800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:15736200-15736800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:15736400-15736800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:15736400-15737000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:15736400-15737000	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links