Variant report

Variant	rs540666045
Chromosome Location	chr6:147429326-147429327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv522096	chr6:147424880-147443480	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv5524	chr6:147428436-147454371	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147424800-147429400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:147425200-147429800	Weak transcription	Fetal Thymus	thymus
3	chr6:147425200-147430600	Weak transcription	Dnd41	blood
4	chr6:147425800-147429600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:147425800-147430000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:147428000-147430600	Enhancers	Primary T cells from cord blood	blood
7	chr6:147428000-147430800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:147428000-147431000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:147428000-147431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:147428000-147431800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:147428200-147430600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:147428200-147430600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:147428400-147429400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:147428600-147431000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:147429000-147429400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:147429000-147429400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:147429200-147429400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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