Variant report

Variant	rs540681476
Chromosome Location	chr3:43257561-43257562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43233608..43236021-chr3:43256055..43258322,2	MCF-7	breast:
2	chr3:43235922..43238512-chr3:43256089..43258366,2	K562	blood:
3	chr3:43256868..43257655-chr3:43265030..43265781,2	K562	blood:
4	chr3:43254448..43258211-chr3:43258239..43261327,4	K562	blood:
5	chr3:43257334..43257885-chr3:43419375..43420223,2	K562	blood:
6	chr3:43203368..43203905-chr3:43256948..43257808,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3439212	chr3:43257514-43258236	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3413981	chr3:43257522-43258240	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43245000-43258800	Weak transcription	Right Atrium	heart
2	chr3:43247800-43259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43253200-43262400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:43253400-43259000	Weak transcription	Spleen	Spleen
5	chr3:43254000-43258000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:43254200-43257800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:43256200-43266800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:43256200-43267000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:43256400-43257800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43256400-43257800	Enhancers	Pancreas	Pancrea
11	chr3:43256600-43260600	Weak transcription	Fetal Kidney	kidney
12	chr3:43256600-43264000	Enhancers	Primary T cells from cord blood	blood
13	chr3:43256800-43261000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:43256800-43264800	Enhancers	Fetal Thymus	thymus
15	chr3:43256800-43264800	Enhancers	Thymus	Thymus
16	chr3:43257000-43260400	Enhancers	NHEK	skin
17	chr3:43257000-43262400	Weak transcription	Fetal Intestine Small	intestine
18	chr3:43257200-43257800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:43257200-43260400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr3:43257200-43260400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr3:43257200-43260600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:43257200-43269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:43257400-43257600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:43257400-43257800	Enhancers	Left Ventricle	heart
25	chr3:43257400-43257800	Enhancers	Lung	lung
26	chr3:43257400-43266600	Enhancers	Primary T helper cells fromperipheralblood	blood

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