Variant report

Variant	rs540686929
Chromosome Location	chr19:41680379-41680380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41678854..41681708-chr19:41768595..41770762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv911767	chr19:41649516-41716271	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv11798	chr19:41679821-41681119	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv15817	chr19:41680257-41680997	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv821187	chr19:41680257-41680997	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv579599	chr19:41680287-41680840	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv579600	chr19:41680341-41680840	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41666000-41681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:41672000-41680800	Weak transcription	Hela-S3	cervix
3	chr19:41677600-41681600	Enhancers	Fetal Intestine Large	intestine
4	chr19:41678000-41680600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr19:41678400-41680800	Enhancers	A549	lung
6	chr19:41678400-41681800	Enhancers	Duodenum Mucosa	Duodenum
7	chr19:41678800-41680600	Weak transcription	Fetal Stomach	stomach
8	chr19:41678800-41681600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr19:41678800-41681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:41679000-41681400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr19:41679000-41681800	Enhancers	Placenta	Placenta
12	chr19:41679200-41680600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr19:41679200-41680600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:41679200-41680600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr19:41679200-41681200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr19:41679200-41681200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr19:41679200-41681800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr19:41679200-41681800	Enhancers	Fetal Intestine Small	intestine
19	chr19:41679400-41680600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr19:41679400-41681600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr19:41679400-41681600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:41679400-41681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr19:41679600-41680600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr19:41679800-41680600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr19:41679800-41680800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr19:41679800-41681600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr19:41680000-41680600	Enhancers	HepG2	liver
28	chr19:41680000-41680600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr19:41680000-41680800	Enhancers	Colonic Mucosa	Colon
30	chr19:41680200-41680400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr19:41680200-41680600	Enhancers	Gastric	stomach
32	chr19:41680200-41681000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr19:41680200-41681000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr19:41680200-41681000	Enhancers	Lung	lung
35	chr19:41680200-41681800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr19:41680200-41682800	Enhancers	Stomach Mucosa	stomach

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