Variant report

Variant	rs540695612
Chromosome Location	chr20:13410722-13410723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:13408378..13410884-chr20:13417652..13421238,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv21228	chr20:13283535-13447810	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1062049	chr20:13347580-13477455	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv544186	chr20:13347580-13477455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv585435	chr20:13410638-13582476	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13364400-13415400	Weak transcription	Right Ventricle	heart
2	chr20:13364600-13416800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr20:13369000-13411200	Strong transcription	Dnd41	blood
4	chr20:13371400-13413600	Weak transcription	Ovary	ovary
5	chr20:13374200-13417200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr20:13374400-13410800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr20:13379200-13463000	Weak transcription	HSMM	muscle
8	chr20:13392600-13421400	Weak transcription	Psoas Muscle	Psoas
9	chr20:13392800-13415000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:13393800-13411000	Weak transcription	Pancreas	Pancrea
11	chr20:13393800-13416800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr20:13394000-13415600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr20:13394200-13416800	Weak transcription	Esophagus	oesophagus
14	chr20:13394200-13417200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr20:13395000-13415000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr20:13395400-13411000	Weak transcription	Spleen	Spleen
17	chr20:13395600-13416800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr20:13395600-13477800	Weak transcription	Gastric	stomach
19	chr20:13396000-13415000	Weak transcription	Brain Hippocampus Middle	brain
20	chr20:13396000-13417000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr20:13397400-13421200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr20:13397800-13414400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr20:13397800-13415000	Weak transcription	Adipose Nuclei	Adipose
24	chr20:13398000-13410800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr20:13398000-13411000	Weak transcription	Primary B cells from cord blood	blood
26	chr20:13398200-13410800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr20:13398200-13411000	Weak transcription	Lung	lung
28	chr20:13398200-13412000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr20:13398200-13414600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr20:13398200-13415000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr20:13398200-13415000	Weak transcription	Aorta	Aorta
32	chr20:13398200-13415000	Weak transcription	Fetal Intestine Small	intestine
33	chr20:13398200-13415000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr20:13398200-13415000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr20:13398200-13416800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr20:13398200-13417800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr20:13399600-13410800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr20:13399800-13430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr20:13400600-13411000	Weak transcription	Placenta	Placenta
40	chr20:13403800-13435000	Weak transcription	HMEC	breast
41	chr20:13404400-13434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr20:13404400-13434800	Weak transcription	NHEK	skin
43	chr20:13405400-13415000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr20:13405400-13417200	Weak transcription	Small Intestine	intestine
45	chr20:13405800-13410800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr20:13406400-13411000	Weak transcription	Fetal Muscle Leg	muscle
47	chr20:13406400-13411000	Weak transcription	Left Ventricle	heart
48	chr20:13406400-13415200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr20:13406600-13410800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr20:13406600-13411000	Weak transcription	Liver	Liver

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