Variant report

Variant	rs540706853
Chromosome Location	chr4:110310588-110310589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110308992..110311628-chr4:110320661..110323611,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110305600-110310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:110306600-110316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:110308800-110310600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:110309600-110310600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:110309600-110310800	Enhancers	GM12878-XiMat	blood
6	chr4:110309600-110311000	Enhancers	Fetal Kidney	kidney
7	chr4:110309600-110311200	Enhancers	HSMM	muscle
8	chr4:110309800-110311200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:110310000-110310800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:110310000-110311000	Enhancers	HSMMtube	muscle
11	chr4:110310000-110311200	Enhancers	Ovary	ovary
12	chr4:110310000-110311400	Enhancers	Fetal Muscle Leg	muscle
13	chr4:110310200-110310600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:110310200-110310600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:110310200-110310600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr4:110310200-110310800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:110310200-110311000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:110310200-110311200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:110310200-110311800	Enhancers	Fetal Heart	heart
20	chr4:110310400-110310600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:110310400-110310800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:110310400-110311200	Enhancers	Fetal Lung	lung

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