Variant report

Variant	rs540728753
Chromosome Location	chr10:61316963-61316964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61316394..61318901-chr10:61319114..61321714,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3693063	chr10:61316344-61331087	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61313400-61317800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61313600-61317000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:61313600-61317000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:61313600-61317400	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:61313600-61320800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:61313800-61317000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:61314000-61317200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:61314600-61317000	Weak transcription	Brain Angular Gyrus	brain
9	chr10:61314800-61317000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:61314800-61317000	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:61316000-61317200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:61316000-61317200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:61316000-61318000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:61316000-61318200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:61316000-61318200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:61316000-61318400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:61316000-61318400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:61316000-61318600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:61316200-61317200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr10:61316200-61318200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr10:61316200-61318400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:61316200-61318600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:61316200-61321400	Enhancers	Fetal Lung	lung
24	chr10:61316400-61317400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:61316400-61317400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:61316400-61317400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:61316600-61317800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:61316600-61318200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:61316800-61317400	Enhancers	Adipose Nuclei	Adipose
30	chr10:61316800-61318200	Enhancers	HUES64 Cell Line	embryonic stem cell

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