Variant report

Variant	rs540730017
Chromosome Location	chr3:69823013-69823014
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:69822972-69823643	MCF10A-Er-Src	breast:	n/a	chr3:69823405-69823414

No.	Distal block	Cell Line	Cell type
1	chr3:69747459..69749389-chr3:69820708..69823563,2	K562	blood:
2	chr3:69771834..69774322-chr3:69822965..69825784,2	K562	blood:
3	chr3:69820056..69823613-chr3:69833464..69836716,3	K562	blood:

Variant related genes	Relation type
RN7SL418P	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69814000-69823800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69814400-69823400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:69814400-69823800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:69814400-69834000	Weak transcription	Right Ventricle	heart
5	chr3:69814600-69824400	Enhancers	Colon Smooth Muscle	Colon
6	chr3:69816000-69823200	Weak transcription	Right Atrium	heart
7	chr3:69816000-69823400	Weak transcription	Aorta	Aorta
8	chr3:69817600-69823200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:69818000-69823800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:69819400-69824600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:69819400-69827200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:69819600-69825800	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:69820000-69824600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:69820600-69823200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:69820800-69823800	Enhancers	Fetal Muscle Leg	muscle
16	chr3:69820800-69825800	Weak transcription	Osteobl	bone
17	chr3:69820800-69826000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:69821000-69825800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:69821200-69823200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:69821200-69823200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:69821200-69825600	Weak transcription	HUVEC	blood vessel
22	chr3:69821200-69834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:69821400-69823400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:69821800-69824400	Enhancers	Ovary	ovary
25	chr3:69821800-69826400	Enhancers	K562	blood
26	chr3:69821800-69826800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:69822000-69825600	Weak transcription	NHDF-Ad	bronchial
28	chr3:69822200-69823400	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:69822400-69823200	Weak transcription	Lung	lung
30	chr3:69822400-69825400	Weak transcription	NHLF	lung
31	chr3:69822400-69830800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:69822400-69834400	Weak transcription	Gastric	stomach
33	chr3:69822600-69823600	Weak transcription	Left Ventricle	heart
34	chr3:69822800-69823800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:69822800-69825800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:69823000-69823400	Weak transcription	Fetal Heart	heart
37	chr3:69823000-69823400	Enhancers	NHEK	skin
38	chr3:69823000-69823800	Enhancers	HMEC	breast
39	chr3:69823000-69824000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:69823000-69824000	Enhancers	Adipose Nuclei	Adipose
41	chr3:69823000-69824200	Enhancers	Psoas Muscle	Psoas
42	chr3:69823000-69824400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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