Variant report

Variant	rs540731169
Chromosome Location	chr2:37808773-37808774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37807890..37810236-chr2:37813003..37815246,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	esv2762494	chr2:37802996-37813373	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv833825	chr2:37808169-37985917	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37796400-37809600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:37796600-37810200	Weak transcription	Pancreas	Pancrea
3	chr2:37799200-37812400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:37801600-37809600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:37802000-37812400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:37804400-37809400	Weak transcription	Primary T cells from cord blood	blood
7	chr2:37804600-37809800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:37804600-37810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:37804600-37810200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:37804600-37810200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:37804800-37808800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:37804800-37809400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:37804800-37809600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:37804800-37809600	Weak transcription	NH-A	brain
15	chr2:37806400-37810200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:37806600-37809000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:37806600-37809000	Weak transcription	NHDF-Ad	bronchial
18	chr2:37806600-37810400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:37806800-37810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:37807800-37808800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:37807800-37808800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:37807800-37809400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr2:37807800-37809600	Weak transcription	K562	blood
24	chr2:37807800-37809800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr2:37808200-37809800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:37808400-37809600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr2:37808400-37809800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr2:37808600-37808800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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