Variant report

Variant	rs540763403
Chromosome Location	chr11:8808295-8808296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3348933	chr11:8808208-8809077	Enhancers Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8788800-8808400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:8791400-8810400	Weak transcription	Hela-S3	cervix
3	chr11:8795000-8809800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:8797800-8827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8798200-8808400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:8798200-8810000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:8800600-8811400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:8800800-8808600	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:8800800-8822400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:8800800-8825800	Weak transcription	Brain Angular Gyrus	brain
11	chr11:8800800-8827400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8801000-8808400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:8801000-8808400	Weak transcription	HepG2	liver
14	chr11:8801000-8815600	Weak transcription	NHDF-Ad	bronchial
15	chr11:8801200-8808400	Weak transcription	HMEC	breast
16	chr11:8801600-8820000	Weak transcription	HSMMtube	muscle
17	chr11:8801600-8827400	Weak transcription	Esophagus	oesophagus
18	chr11:8801800-8808400	Weak transcription	Brain Anterior Caudate	brain
19	chr11:8801800-8808600	Weak transcription	NHEK	skin
20	chr11:8801800-8808800	Weak transcription	Placenta	Placenta
21	chr11:8801800-8814200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:8802000-8816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:8802200-8808400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:8802200-8808600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:8802200-8819200	Weak transcription	NH-A	brain
26	chr11:8802400-8810600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:8802800-8816000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:8803000-8815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:8803000-8820600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:8804400-8811000	Enhancers	Colon Smooth Muscle	Colon
31	chr11:8805200-8808600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:8805800-8808600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:8805800-8811400	Weak transcription	Aorta	Aorta
34	chr11:8806000-8810800	Enhancers	Right Ventricle	heart
35	chr11:8806400-8810800	Enhancers	Fetal Heart	heart
36	chr11:8806600-8808600	Genic enhancers	Fetal Stomach	stomach
37	chr11:8806600-8808800	Strong transcription	NHLF	lung
38	chr11:8806600-8809400	Enhancers	Left Ventricle	heart
39	chr11:8806800-8809400	Enhancers	Pancreas	Pancrea
40	chr11:8807000-8811800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr11:8807200-8808600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:8807200-8809800	Enhancers	Stomach Smooth Muscle	stomach
43	chr11:8807200-8811600	Weak transcription	Fetal Intestine Large	intestine
44	chr11:8807400-8808400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:8807400-8808600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:8807400-8808800	Weak transcription	Stomach Mucosa	stomach
47	chr11:8807400-8809000	Weak transcription	Spleen	Spleen
48	chr11:8807400-8811400	Weak transcription	Lung	lung
49	chr11:8807600-8809600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:8807600-8814000	Weak transcription	Fetal Lung	lung

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