Variant report

Variant	rs540770720
Chromosome Location	chr11:9661885-9661886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9659400-9663200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:9660200-9663000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:9660400-9662600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:9660600-9662800	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:9660600-9662800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:9660600-9663000	Enhancers	Placenta	Placenta
7	chr11:9660600-9670400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:9661200-9662600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:9661200-9665800	Weak transcription	Right Atrium	heart
10	chr11:9661200-9666200	Weak transcription	Lung	lung
11	chr11:9661600-9662600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:9661600-9667600	Weak transcription	Spleen	Spleen
13	chr11:9661800-9662200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:9661800-9664200	Weak transcription	Primary B cells from cord blood	blood
15	chr11:9661800-9665200	Weak transcription	Fetal Intestine Large	intestine
16	chr11:9661800-9665200	Weak transcription	Fetal Intestine Small	intestine
17	chr11:9661800-9667200	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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