Variant report

Variant	rs540773241
Chromosome Location	chr11:72349942-72349943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72340095..72342278-chr11:72348258..72351014,2	MCF-7	breast:
2	chr11:72342072..72343913-chr11:72348665..72350291,3	K562	blood:
3	chr11:72345729..72347708-chr11:72348323..72351528,4	K562	blood:

Variant related genes	Relation type
ENSG00000186642	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
4	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv825991	chr11:72320642-72385221	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3413076	chr11:72349804-72353302	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72334800-72350200	Enhancers	Left Ventricle	heart
2	chr11:72335800-72350600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:72336000-72350400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:72339000-72350600	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:72343400-72350200	Enhancers	Right Atrium	heart
6	chr11:72343400-72351000	Weak transcription	Esophagus	oesophagus
7	chr11:72343600-72350800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:72343600-72351000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:72344600-72351600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr11:72345800-72350400	Enhancers	Colon Smooth Muscle	Colon
11	chr11:72346600-72350400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr11:72346800-72351600	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr11:72347000-72350800	Enhancers	Spleen	Spleen
14	chr11:72347200-72351000	Enhancers	Brain Angular Gyrus	brain
15	chr11:72347600-72351000	Enhancers	Right Ventricle	heart
16	chr11:72348200-72351000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr11:72348600-72352600	Enhancers	Lung	lung
18	chr11:72348800-72352800	Weak transcription	Gastric	stomach
19	chr11:72349000-72350800	Weak transcription	Fetal Brain Male	brain
20	chr11:72349000-72352200	Weak transcription	Pancreas	Pancrea
21	chr11:72349400-72350200	Weak transcription	Brain Anterior Caudate	brain
22	chr11:72349400-72350200	Weak transcription	Hela-S3	cervix
23	chr11:72349400-72350400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:72349400-72352000	Weak transcription	Liver	Liver
25	chr11:72349600-72350000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:72349600-72350200	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr11:72349600-72351000	Weak transcription	Psoas Muscle	Psoas
28	chr11:72349800-72350400	Bivalent Enhancer	Fetal Stomach	stomach

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