Variant report

Variant	rs540775369
Chromosome Location	chr12:106646448-106646449
allele	-/GAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:106646357-106646699	A549	lung:	n/a	n/a
2	CEBPB	chr12:106646362-106646708	IMR90	lung:	n/a	n/a
3	CEBPB	chr12:106646358-106646710	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106634944..106646449-chr12:106667585..106679535,27	MCF-7	breast:
2	chr12:106644967..106648309-chr12:106659700..106662827,5	MCF-7	breast:
3	chr12:106645468..106647361-chr12:106648038..106649886,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP11L2-1	chr12:106645908-106646559	NONHSAT030477
2	lnc-TCP11L2-1	chr12:106645908-106646559	XLOC_009869

No data

Variant related genes	Relation type
CKAP4	TF binding region
ENSG00000238609	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799917	chr12:106637876-106649988	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1834434	chr12:106637876-106649988	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3423758	chr12:106646369-106649583	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106642800-106647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:106642800-106647800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:106642800-106648400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:106643000-106647800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:106643200-106646600	Weak transcription	NHEK	skin
6	chr12:106643200-106647200	Weak transcription	Aorta	Aorta
7	chr12:106643200-106647800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:106643200-106647800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:106643200-106647800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:106643200-106648800	Weak transcription	Right Atrium	heart
11	chr12:106643400-106648400	Weak transcription	Fetal Lung	lung
12	chr12:106643400-106648400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:106644000-106648200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr12:106644200-106649800	Weak transcription	Fetal Heart	heart
15	chr12:106644400-106649400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr12:106645600-106647800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr12:106645800-106647600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:106645800-106647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:106645800-106647800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:106645800-106647800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:106645800-106647800	Weak transcription	Fetal Muscle Leg	muscle
22	chr12:106645800-106648000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:106645800-106648000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr12:106645800-106648200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:106646000-106647600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr12:106646200-106647600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:106646200-106658800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr12:106646400-106646600	ZNF genes & repeats	Fetal Kidney	kidney

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