Variant report

Variant	rs540788144
Chromosome Location	chr20:29804882-29804883
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3342568	chr20:29803909-29834289	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
2	esv3362807	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
3	esv3392375	chr20:29803909-29834289	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3412704	chr20:29803909-29834289	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	esv3445374	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
6	esv3451819	chr20:29803909-29834389	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv964448	chr20:29803909-29857200	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv10142	chr20:29804062-29833443	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3410660	chr20:29804176-29804936	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv585876	chr20:29804208-29812781	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv585877	chr20:29804208-29813278	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv585878	chr20:29804208-29814380	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
13	nsv585879	chr20:29804208-29816499	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
14	nsv585880	chr20:29804208-29819916	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv585881	chr20:29804208-29820738	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv585882	chr20:29804208-29822325	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv585883	chr20:29804208-29823205	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv585884	chr20:29804208-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
19	nsv585885	chr20:29804208-29830347	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
20	nsv585886	chr20:29804208-29832022	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv585887	chr20:29804208-29833609	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv585888	chr20:29804208-29844859	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
23	esv1806248	chr20:29804293-29812781	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv585889	chr20:29804293-29813278	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
25	nsv585890	chr20:29804293-29814380	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
26	nsv585891	chr20:29804293-29816499	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
27	esv1841241	chr20:29804293-29819916	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
28	nsv585892	chr20:29804293-29819916	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
29	nsv585893	chr20:29804293-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
30	nsv585894	chr20:29804293-29830347	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
31	esv1805772	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
32	esv1814224	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
33	esv1819293	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
34	esv1838661	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
35	nsv585895	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
36	esv1800744	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	esv1806005	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
38	esv1809844	chr20:29804293-29860684	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
39	esv1821656	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
40	esv1829940	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
41	esv1836734	chr20:29804293-29860684	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
42	esv1839077	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	esv1850349	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
44	esv994391	chr20:29804598-29832573	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
45	esv3525254	chr20:29804605-29807960	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
46	esv3525255	chr20:29804605-29807960	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29805000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:29803800-29805000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
3	chr20:29803800-29805200	ZNF genes & repeats	Colon Smooth Muscle	Colon
4	chr20:29803800-29806800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
5	chr20:29803800-29807000	ZNF genes & repeats	Colonic Mucosa	Colon
6	chr20:29803800-29809400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:29803800-29809800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr20:29803800-29809800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
9	chr20:29803800-29811000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr20:29803800-29811200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:29803800-29811200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
12	chr20:29803800-29814000	ZNF genes & repeats	Fetal Heart	heart
13	chr20:29803800-29818600	ZNF genes & repeats	Brain Angular Gyrus	brain
14	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
17	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
20	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
21	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
22	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
26	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
27	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
31	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
32	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
35	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
38	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
40	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr20:29804000-29805200	ZNF genes & repeats	Spleen	Spleen
42	chr20:29804000-29805200	ZNF genes & repeats	HUVEC	blood vessel
43	chr20:29804000-29805400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
44	chr20:29804000-29807000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
45	chr20:29804000-29809200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr20:29804000-29810600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
47	chr20:29804000-29814000	ZNF genes & repeats	GM12878-XiMat	blood
48	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
49	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood

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