Variant report

Variant	rs540791432
Chromosome Location	chr6:166999786-166999787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BRP44L-3	chr6:166999612-166999965	NONHSAT116053

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	esv3522272	chr6:166998312-167001210	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2580547	chr6:166998381-167000738	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3522269	chr6:166998589-167000640	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2182887	chr6:166998779-167000380	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3474374	chr6:166998856-167000273	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv969468	chr6:166998864-166999985	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3522267	chr6:166998886-167000246	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3522270	chr6:166998903-167000274	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3474371	chr6:166998912-167000239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3474373	chr6:166998920-167000242	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3522268	chr6:166998925-167000223	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3522271	chr6:166998932-167000213	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3474372	chr6:166998960-167000176	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3522266	chr6:166998972-167000186	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3474376	chr6:166998977-167000181	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3522273	chr6:166998977-167000181	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv349126	chr6:166998991-167000180	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv17712	chr6:166999036-167000159	Weak transcription Enhancers Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:166986200-167002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:166986600-167001400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:166986800-167003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:166987000-167002000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:166987200-167001800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:166989000-167011400	Weak transcription	Ovary	ovary
8	chr6:166989600-167001800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:166990600-167001800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:166992400-167000200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:166992400-167000400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:166993600-167003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:166993800-167001800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:166994000-167003600	Weak transcription	Brain Germinal Matrix	brain
15	chr6:166994800-167002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:166995000-167008400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:166995600-167000200	Weak transcription	Brain Angular Gyrus	brain
18	chr6:166995600-167002400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:166995800-167000400	Weak transcription	Spleen	Spleen
20	chr6:166995800-167001200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:166995800-167001600	Weak transcription	Gastric	stomach
22	chr6:166995800-167002200	Weak transcription	Right Ventricle	heart
23	chr6:166996800-167000600	Weak transcription	Stomach Mucosa	stomach
24	chr6:166996800-167001400	Weak transcription	Brain Anterior Caudate	brain
25	chr6:166997000-167000400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:166997000-167000600	Weak transcription	Fetal Kidney	kidney
27	chr6:166997000-167002200	Weak transcription	Pancreas	Pancrea
28	chr6:166997000-167003000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:166997200-167002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:166997200-167002200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:166997200-167003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:166997200-167006000	Weak transcription	Aorta	Aorta
33	chr6:166997400-167003000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:166997600-167002200	Weak transcription	HMEC	breast
35	chr6:166997800-167000400	Weak transcription	Primary B cells from cord blood	blood
36	chr6:166997800-167001200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:166997800-167001600	Weak transcription	Lung	lung
38	chr6:166998000-167000000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:166998000-167000400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:166998000-167000400	Weak transcription	Fetal Intestine Small	intestine
41	chr6:166998000-167000600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:166998000-167000800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:166998000-167011200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:166998200-167002200	Weak transcription	Left Ventricle	heart
45	chr6:166998600-167000200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:166998600-167000200	Weak transcription	Brain Substantia Nigra	brain
47	chr6:166998600-167000400	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr6:166998600-167001400	Weak transcription	Fetal Stomach	stomach
49	chr6:166998600-167002400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:166998800-167000000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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