Variant report

Variant	rs540796492
Chromosome Location	chr1:158728227-158728228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158651114..158653909-chr1:158727740..158729801,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006288	chr1:158684002-158844221	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv535181	chr1:158684002-158844221	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv817245	chr1:158684003-158844220	Enhancers Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv547988	chr1:158685036-158848064	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv547989	chr1:158685036-158852953	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1011085	chr1:158703583-158845135	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv547995	chr1:158715773-158729346	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3320744	chr1:158726461-158728332	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1824252	chr1:158726746-158734964	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv548005	chr1:158727025-158729346	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1816019	chr1:158727025-158729713	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv548006	chr1:158727025-158729713	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv548007	chr1:158727025-158730907	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1840223	chr1:158727025-158734601	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv548012	chr1:158727096-158729346	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv548015	chr1:158727147-158729346	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv548016	chr1:158727147-158730907	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv548018	chr1:158727311-158729346	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv2074110	chr1:158728224-158728227	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1080170	chr1:158728224-158728227	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158692600-158735200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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