Variant report

Variant	rs540797263
Chromosome Location	chr2:173268065-173268066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173266015..173268775-chr2:173291252..173293915,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226963	Chromatin interaction
ENSG00000091409	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv875414	chr2:173267081-173307756	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173259000-173268400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:173262200-173269600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:173263400-173268200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:173263400-173273000	Weak transcription	Right Atrium	heart
5	chr2:173263600-173272800	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:173264600-173268200	Weak transcription	Lung	lung
7	chr2:173266800-173268600	Enhancers	Left Ventricle	heart
8	chr2:173266800-173268600	Enhancers	Right Ventricle	heart
9	chr2:173266800-173268800	Enhancers	Adipose Nuclei	Adipose
10	chr2:173267200-173268200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:173267200-173268200	Weak transcription	HUVEC	blood vessel
12	chr2:173267400-173268400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:173267400-173268400	Enhancers	NHEK	skin
14	chr2:173267400-173268600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:173267600-173270600	Enhancers	HMEC	breast
16	chr2:173267600-173275600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:173267800-173274600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:173268000-173268200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr2:173268000-173268600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:173268000-173268600	Enhancers	Esophagus	oesophagus
21	chr2:173268000-173268600	Enhancers	Fetal Thymus	thymus
22	chr2:173268000-173270400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:173268000-173270600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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