Variant report

Variant	rs540820620
Chromosome Location	chr7:106811191-106811192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106682746..106686911-chr7:106807556..106811745,9	K562	blood:
2	chr7:106413235..106416729-chr7:106808294..106812162,5	K562	blood:
3	chr7:106811171..106813600-chr7:106828376..106831350,2	MCF-7	breast:
4	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
5	chr7:106808400..106812418-chr7:106824330..106827302,6	K562	blood:
6	chr7:106808413..106811737-chr7:107382761..107387306,8	K562	blood:
7	chr7:106806529..106812770-chr7:107382455..107386610,12	K562	blood:
8	chr7:106682031..106689663-chr7:106807150..106811711,11	K562	blood:
9	chr1:203691216..203693456-chr7:106809047..106812033,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction
ENSG00000241764	Chromatin interaction
ENSG00000058668	Chromatin interaction
ENSG00000105879	Chromatin interaction
ENSG00000005249	Chromatin interaction
ENSG00000228742	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv3355666	chr7:106810341-106812889	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106807000-106811400	Active TSS	NHLF	lung
2	chr7:106807400-106811200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:106807400-106811200	Active TSS	Fetal Intestine Large	intestine
4	chr7:106807400-106811400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:106807600-106811200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:106807600-106811200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:106807600-106811200	Active TSS	Fetal Kidney	kidney
8	chr7:106807600-106811200	Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr7:106807600-106811400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr7:106807600-106811400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:106807600-106811400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr7:106807600-106811400	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr7:106807600-106811400	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr7:106807600-106811400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr7:106807600-106811400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:106807600-106811400	Active TSS	NHDF-Ad	bronchial
17	chr7:106807600-106812000	Active TSS	K562	blood
18	chr7:106807800-106811200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:106807800-106811200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:106807800-106811200	Active TSS	Aorta	Aorta
21	chr7:106807800-106811200	Active TSS	Colon Smooth Muscle	Colon
22	chr7:106807800-106811200	Active TSS	Right Ventricle	heart
23	chr7:106807800-106811200	Active TSS	Thymus	Thymus
24	chr7:106807800-106811400	Active TSS	H1 Cell Line	embryonic stem cell
25	chr7:106807800-106811400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:106807800-106811400	Active TSS	Psoas Muscle	Psoas
27	chr7:106807800-106811400	Active TSS	GM12878-XiMat	blood
28	chr7:106807800-106811400	Active TSS	HSMMtube	muscle
29	chr7:106807800-106811800	Active TSS	Ovary	ovary
30	chr7:106808000-106811200	Active TSS	Brain Angular Gyrus	brain
31	chr7:106808000-106811400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:106808000-106811400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:106808000-106811400	Active TSS	Monocytes-CD14+_RO01746	blood
34	chr7:106808200-106811200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:106808200-106811200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:106808400-106811400	Active TSS	Lung	lung
37	chr7:106808800-106811200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr7:106809000-106811400	Active TSS	Muscle Satellite Cultured Cells	--
39	chr7:106809000-106811800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:106809400-106812400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
41	chr7:106809600-106811400	Active TSS	Right Atrium	heart
42	chr7:106810400-106811200	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr7:106810400-106811200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr7:106810400-106811200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr7:106810400-106811200	Flanking Active TSS	Fetal Lung	lung
46	chr7:106810400-106811200	Flanking Active TSS	HUVEC	blood vessel
47	chr7:106810400-106811400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:106810400-106811400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr7:106810400-106811400	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr7:106810400-106811400	Flanking Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links