The 2.0 version of rSNPBase

Variant report

Variant rs540823334
Chromosome Location chr17:45423224-45423225
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:45402000-45428600 Weak transcription Spleen Spleen
2 chr17:45402000-45442600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr17:45402200-45446400 Weak transcription Colon Smooth Muscle Colon
4 chr17:45402200-45500800 Weak transcription Aorta Aorta
5 chr17:45402400-45423400 Weak transcription NHDF-Ad bronchial
6 chr17:45402400-45424200 Weak transcription Fetal Brain Male brain
7 chr17:45402400-45427200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr17:45402400-45428400 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr17:45402400-45433600 Weak transcription Fetal Heart heart
10 chr17:45402400-45433600 Weak transcription Fetal Intestine Small intestine
11 chr17:45402400-45433600 Weak transcription Fetal Stomach stomach
12 chr17:45402400-45435800 Weak transcription Rectal Smooth Muscle rectum
13 chr17:45402400-45436000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr17:45402600-45423400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr17:45402600-45424600 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr17:45402600-45428800 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr17:45402800-45440800 Weak transcription Primary T cells from cord blood blood
18 chr17:45403000-45429400 Weak transcription Placenta Placenta
19 chr17:45407600-45435800 Weak transcription Fetal Intestine Large intestine
20 chr17:45409200-45425200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr17:45411200-45424000 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr17:45411600-45468200 Weak transcription Left Ventricle heart
23 chr17:45412400-45463400 Weak transcription Gastric stomach
24 chr17:45413400-45423800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr17:45413400-45463800 Weak transcription Ovary ovary
26 chr17:45418600-45425000 Strong transcription Primary B cells from peripheral blood blood
27 chr17:45419600-45425000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr17:45420000-45424600 Weak transcription Primary hematopoietic stem cells blood
29 chr17:45421800-45449800 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr17:45422000-45433200 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr17:45422600-45423400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr17:45423000-45426000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr17:45423000-45435000 Weak transcription Liver Liver
34 chr17:45423000-45450000 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr17:45423000-45465400 Weak transcription Adipose Nuclei Adipose
36 chr17:45423200-45424800 Weak transcription Primary monocytes fromperipheralblood blood
37 chr17:45423200-45424800 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr17:45423200-45426600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr17:45423200-45435000 Weak transcription Duodenum Mucosa Duodenum
40 chr17:45423200-45450000 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015