Variant report

Variant	rs540823853
Chromosome Location	chr6:30195349-30195350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv884059	chr6:30190484-30199016	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv884060	chr6:30190640-30203602	Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30195000-30196200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:30195200-30195400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:30195200-30195400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:30195200-30195400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr6:30195200-30195400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:30195200-30195400	Bivalent/Poised TSS	HepG2	liver
7	chr6:30195200-30196000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:30195200-30196000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:30195200-30196000	Active TSS	GM12878-XiMat	blood
10	chr6:30195200-30196400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:30195200-30196400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:30195200-30196400	Enhancers	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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