Variant report

Variant	rs540834649
Chromosome Location	chr11:66089768-66089769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66089326..66092230-chr11:66092519..66097068,6	K562	blood:
2	chr11:66079025..66079721-chr11:66089471..66090121,2	K562	blood:
3	chr11:66054004..66059089-chr11:66088488..66094920,9	MCF-7	breast:
4	chr11:65990260..65990801-chr11:66089476..66090019,2	K562	blood:
5	chr11:66089278..66092280-chr11:66092886..66097368,7	K562	blood:

Variant related genes	Relation type
ENSG00000174851	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	esv3339891	chr11:66088976-66093674	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66084600-66103200	Weak transcription	Small Intestine	intestine
2	chr11:66086200-66090600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:66086200-66091800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:66086200-66092000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:66086200-66095400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:66086400-66092200	Weak transcription	Lung	lung
7	chr11:66086400-66092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:66086400-66092600	Weak transcription	Colonic Mucosa	Colon
9	chr11:66086600-66090000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:66086600-66091800	Weak transcription	HSMM	muscle
11	chr11:66086600-66092600	Weak transcription	Right Ventricle	heart
12	chr11:66086600-66093600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:66086600-66095000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:66086800-66090000	Weak transcription	Fetal Stomach	stomach
15	chr11:66086800-66091000	Weak transcription	Spleen	Spleen
16	chr11:66086800-66091600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:66086800-66091800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:66086800-66091800	Weak transcription	Fetal Lung	lung
19	chr11:66086800-66091800	Weak transcription	Hela-S3	cervix
20	chr11:66086800-66092200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:66086800-66092400	Weak transcription	Fetal Intestine Large	intestine
22	chr11:66086800-66093200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:66086800-66093600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:66086800-66093600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:66087000-66090400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:66087000-66091600	Weak transcription	Esophagus	oesophagus
27	chr11:66087200-66090000	Weak transcription	Thymus	Thymus
28	chr11:66087200-66091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:66087200-66093400	Weak transcription	Fetal Intestine Small	intestine
30	chr11:66088000-66089800	Weak transcription	Placenta	Placenta
31	chr11:66088800-66090200	Enhancers	Primary T cells from cord blood	blood
32	chr11:66089000-66089800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr11:66089000-66090200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:66089000-66090200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:66089000-66090600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr11:66089000-66090600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr11:66089000-66090600	Enhancers	Fetal Muscle Leg	muscle
38	chr11:66089000-66090800	Enhancers	Fetal Thymus	thymus
39	chr11:66089000-66091200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr11:66089000-66093400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr11:66089000-66094800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:66089000-66094800	Enhancers	NHDF-Ad	bronchial
43	chr11:66089000-66095000	Enhancers	Adipose Nuclei	Adipose
44	chr11:66089200-66090000	Enhancers	Colon Smooth Muscle	Colon
45	chr11:66089200-66090200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:66089200-66090800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:66089200-66091200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:66089200-66094200	Enhancers	Osteobl	bone
49	chr11:66089200-66097600	Enhancers	NHLF	lung
50	chr11:66089400-66089800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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