Variant report

Variant	rs540851393
Chromosome Location	chr16:81515247-81515248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81477417..81480247-chr16:81511265..81517424,6	MCF-7	breast:
2	chr16:81513398..81515319-chr16:81515579..81518063,2	MCF-7	breast:
3	chr16:81512810..81515349-chr16:81620937..81623015,2	K562	blood:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907010	chr16:81488893-81534790	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv573359	chr16:81509279-81525637	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81485600-81516800	Weak transcription	Hela-S3	cervix
2	chr16:81486600-81525200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:81503000-81516600	Weak transcription	Brain Germinal Matrix	brain
4	chr16:81504000-81517800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:81504200-81518200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr16:81505200-81525600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr16:81505400-81521800	Weak transcription	Fetal Kidney	kidney
8	chr16:81505800-81523600	Weak transcription	Fetal Brain Male	brain
9	chr16:81506000-81546600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:81506600-81547000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr16:81506800-81517600	Weak transcription	HMEC	breast
12	chr16:81507600-81516400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr16:81507600-81518400	Enhancers	Spleen	Spleen
14	chr16:81507800-81516400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr16:81507800-81519400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr16:81508000-81516400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr16:81508000-81518000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr16:81508600-81519400	Weak transcription	Ovary	ovary
19	chr16:81509400-81518000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr16:81509800-81517600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr16:81509800-81518600	Enhancers	Lung	lung
22	chr16:81510000-81516000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr16:81510000-81517200	Enhancers	Small Intestine	intestine
24	chr16:81510000-81518400	Enhancers	Placenta	Placenta
25	chr16:81510000-81518800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr16:81510200-81516000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:81510200-81517000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr16:81510400-81522400	Weak transcription	Fetal Brain Female	brain
29	chr16:81510400-81533200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr16:81510600-81518000	Enhancers	Liver	Liver
31	chr16:81510600-81521200	Enhancers	Stomach Mucosa	stomach
32	chr16:81511000-81517000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr16:81511400-81527000	Enhancers	Fetal Muscle Leg	muscle
34	chr16:81511600-81517200	Enhancers	Pancreas	Pancrea
35	chr16:81511600-81518200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr16:81511800-81515800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr16:81512000-81516200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr16:81512400-81515800	Weak transcription	Colon Smooth Muscle	Colon
39	chr16:81512400-81515800	Weak transcription	Right Ventricle	heart
40	chr16:81512400-81525000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr16:81512600-81515800	Weak transcription	Left Ventricle	heart
42	chr16:81512800-81515400	Enhancers	Primary T cells from cord blood	blood
43	chr16:81512800-81516400	Weak transcription	Dnd41	blood
44	chr16:81512800-81518600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr16:81513000-81517200	Genic enhancers	A549	lung
46	chr16:81513200-81517800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr16:81513400-81515400	Enhancers	Brain Anterior Caudate	brain
48	chr16:81513400-81517600	Enhancers	Primary hematopoietic stem cells	blood
49	chr16:81513600-81516800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr16:81513600-81517200	Enhancers	Fetal Muscle Trunk	muscle

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