Variant report

Variant	rs540882925
Chromosome Location	chr15:92937218-92937219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:92936271-92938347	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr15:92936463-92938759	H1-hESC	embryonic stem cell:	n/a	chr15:92938512-92938521 chr15:92937667-92937677 chr15:92936907-92936917 chr15:92938011-92938021 chr15:92937571-92937581
3	SIN3A	chr15:92936277-92938776	H1-hESC	embryonic stem cell:	n/a	chr15:92936363-92936376 chr15:92936514-92936523 chr15:92938276-92938290 chr15:92938301-92938312 chr15:92937586-92937597 chr15:92936394-92936403
4	GABPA	chr15:92937065-92937335	H1-hESC	embryonic stem cell:	n/a	chr15:92937205-92937214 chr15:92937198-92937207
5	YY1	chr15:92937112-92937415	H1-hESC	embryonic stem cell:	n/a	chr15:92937214-92937228 chr15:92937229-92937243 chr15:92937202-92937216
6	POLR2A	chr15:92936762-92938175	H1-hESC	embryonic stem cell:	n/a	n/a
7	TAF1	chr15:92936425-92938207	H1-neurons	neurons:	n/a	n/a
8	RAD21	chr15:92936708-92937413	H1-hESC	embryonic stem cell:	n/a	n/a
9	SIN3AK20	chr15:92936589-92937649	H1-hESC	embryonic stem cell:	n/a	n/a
10	TBP	chr15:92936667-92937426	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr15:92936633-92937252	H1-hESC	embryonic stem cell:	n/a	n/a
12	CREB1	chr15:92936565-92937698	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTBP2	chr15:92936285-92937466	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr15:92936824-92937469	ECC-1	luminal epithelium:	n/a	chr15:92936907-92936917
15	TAF1	chr15:92936612-92937317	H1-hESC	embryonic stem cell:	n/a	n/a
16	GABPA	chr15:92937054-92937453	H1-hESC	embryonic stem cell:	n/a	chr15:92937205-92937214 chr15:92937198-92937207
17	POLR2A	chr15:92937002-92937261	H1-hESC	embryonic stem cell:	n/a	n/a
18	MXI1	chr15:92936837-92937485	H1-hESC	embryonic stem cell:	n/a	n/a
19	MXI1	chr15:92936549-92939002	SK-N-SH	brain:	n/a	n/a
20	MAX	chr15:92936603-92937440	H1-hESC	embryonic stem cell:	n/a	chr15:92936907-92936917
21	REST	chr15:92936299-92939165	H1-neurons	neurons:	n/a	chr15:92936368-92936382 chr15:92938299-92938312 chr15:92937734-92937747 chr15:92939053-92939073 chr15:92936459-92936472 chr15:92938397-92938410 chr15:92937215-92937228 chr15:92936459-92936472
22	POLR2A	chr15:92936281-92938278	H1-neurons	neurons:	n/a	n/a
23	POLR2A	chr15:92936218-92938920	H1-neurons	neurons:	n/a	n/a
24	ZNF263	chr15:92936574-92937484	HEK293-T-REx	kidney:	n/a	chr15:92936977-92936986 chr15:92937235-92937256
25	CREB1	chr15:92936690-92937292	H1-hESC	embryonic stem cell:	n/a	n/a
26	MAX	chr15:92936496-92938099	H1-hESC	embryonic stem cell:	n/a	chr15:92937667-92937677 chr15:92936907-92936917 chr15:92938011-92938021 chr15:92937571-92937581
27	MYC	chr15:92936832-92937386	H1-hESC	embryonic stem cell:	n/a	chr15:92936907-92936917
28	CHD1	chr15:92937189-92937501	H1-hESC	embryonic stem cell:	n/a	chr15:92937250-92937260

Variant related genes	Relation type
ST8SIA2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv3393959	chr15:92935948-92939196	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92935400-92938400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr15:92935400-92938800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:92935800-92938800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr15:92936200-92938600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr15:92936200-92939400	Active TSS	HSMM	muscle
6	chr15:92936400-92938200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr15:92936400-92938600	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr15:92936400-92938800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:92936400-92938800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:92936400-92939200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr15:92936600-92937600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
12	chr15:92936600-92937600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
13	chr15:92936600-92937800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:92936600-92938000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr15:92936600-92938000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
16	chr15:92936600-92938200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr15:92936600-92938200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:92936600-92938400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr15:92936600-92938400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
20	chr15:92936600-92938400	Enhancers	Pancreas	Pancrea
21	chr15:92936600-92938400	Active TSS	Right Atrium	heart
22	chr15:92936600-92938400	Bivalent/Poised TSS	Right Ventricle	heart
23	chr15:92936600-92938400	Active TSS	NHDF-Ad	bronchial
24	chr15:92936600-92938600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:92936600-92938600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr15:92936600-92938600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr15:92936600-92938600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:92936600-92938600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:92936600-92938600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
30	chr15:92936600-92938800	Active TSS	Fetal Brain Female	brain
31	chr15:92936600-92939400	Active TSS	HSMMtube	muscle
32	chr15:92936800-92937400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
33	chr15:92936800-92937400	Active TSS	Fetal Brain Male	brain
34	chr15:92936800-92937400	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
35	chr15:92936800-92937400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
36	chr15:92936800-92937600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:92936800-92937600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
38	chr15:92936800-92937800	Enhancers	Gastric	stomach
39	chr15:92936800-92938000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:92936800-92938000	Bivalent/Poised TSS	Fetal Stomach	stomach
41	chr15:92936800-92938200	Enhancers	Liver	Liver
42	chr15:92936800-92938200	Active TSS	Fetal Kidney	kidney
43	chr15:92936800-92938200	Bivalent/Poised TSS	A549	lung
44	chr15:92936800-92938400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:92936800-92938400	Active TSS	Left Ventricle	heart
46	chr15:92936800-92938400	Bivalent Enhancer	Lung	lung
47	chr15:92936800-92938400	Active TSS	NH-A	brain
48	chr15:92936800-92938600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr15:92936800-92938600	Active TSS	H9 Cell Line	embryonic stem cell
50	chr15:92936800-92938600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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