Variant report

Variant	rs540921011
Chromosome Location	chr1:95085325-95085326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95075515..95077960-chr1:95084097..95086216,2	K562	blood:
2	chr1:95083696..95086099-chr1:95111956..95113779,2	MCF-7	breast:
3	chr1:95084398..95087368-chr1:95088701..95090405,2	MCF-7	breast:
4	chr1:95005520..95008552-chr1:95083214..95086682,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117525	Chromatin interaction
ENSG00000235565	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv947122	chr1:95081067-95089572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1001230	chr1:95085184-95108531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95065600-95087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:95075200-95088400	Weak transcription	Fetal Lung	lung
3	chr1:95075600-95086000	Weak transcription	Fetal Stomach	stomach
4	chr1:95078600-95086000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:95080800-95086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:95081000-95085400	Weak transcription	Stomach Mucosa	stomach
7	chr1:95082400-95086200	Weak transcription	Fetal Heart	heart
8	chr1:95082600-95088200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:95082800-95088200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:95083000-95087600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:95083000-95087800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:95083200-95086400	Weak transcription	A549	lung
13	chr1:95083400-95085800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:95083400-95086200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:95083400-95086200	Weak transcription	Small Intestine	intestine
16	chr1:95083400-95087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:95083400-95088600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:95083600-95085400	Weak transcription	HSMM	muscle
19	chr1:95083800-95086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:95083800-95086800	Weak transcription	NHLF	lung
21	chr1:95083800-95087200	Weak transcription	Osteobl	bone
22	chr1:95083800-95088600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:95084000-95086400	Weak transcription	Colonic Mucosa	Colon
24	chr1:95084000-95086600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:95084000-95086800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:95084000-95086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:95084000-95087000	Weak transcription	HepG2	liver
28	chr1:95084000-95087600	Weak transcription	NHDF-Ad	bronchial
29	chr1:95084000-95088200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:95084800-95090200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:95085000-95086200	Enhancers	NHEK	skin
32	chr1:95085000-95090200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:95085000-95090600	Enhancers	HMEC	breast
34	chr1:95085200-95085400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr1:95085200-95085600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr1:95085200-95085800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:95085200-95086800	Enhancers	Hela-S3	cervix
38	chr1:95085200-95087200	Enhancers	Gastric	stomach
39	chr1:95085200-95087200	Enhancers	Lung	lung
40	chr1:95085200-95087800	Enhancers	Pancreas	Pancrea
41	chr1:95085200-95087800	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr1:95085200-95089600	Enhancers	Fetal Intestine Small	intestine
43	chr1:95085200-95089800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr1:95085200-95090000	Enhancers	NH-A	brain
45	chr1:95085200-95090600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:95085200-95090600	Enhancers	Placenta Amnion	Placenta Amnion
47	chr1:95085200-95090800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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