Variant report

Variant	rs540927984
Chromosome Location	chr15:75323597-75323598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75320623..75324392-chr15:75326315..75329283,4	K562	blood:
2	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
3	chr15:75321516..75324460-chr15:75459942..75461573,2	MCF-7	breast:
4	chr15:75322075..75324448-chr15:75506120..75508117,2	MCF-7	breast:
5	chr15:75314737..75326433-chr15:75490770..75500610,30	K562	blood:
6	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv3438648	chr15:75323300-75323660	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75316600-75336800	Weak transcription	Fetal Brain Female	brain
2	chr15:75316800-75338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75317200-75335000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:75318000-75341400	Weak transcription	Brain Germinal Matrix	brain
5	chr15:75320600-75323800	Genic enhancers	Fetal Muscle Trunk	muscle
6	chr15:75321400-75326600	Enhancers	Primary B cells from cord blood	blood
7	chr15:75321600-75324000	Enhancers	Lung	lung
8	chr15:75321600-75324800	Enhancers	HMEC	breast
9	chr15:75321800-75323600	Enhancers	Right Ventricle	heart
10	chr15:75321800-75323800	Enhancers	Esophagus	oesophagus
11	chr15:75321800-75326600	Enhancers	Fetal Thymus	thymus
12	chr15:75322000-75324400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:75322000-75326600	Enhancers	Placenta	Placenta
14	chr15:75322200-75323600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:75322200-75323600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr15:75322200-75325000	Enhancers	Primary hematopoietic stem cells	blood
17	chr15:75322200-75327200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:75322200-75328200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:75322200-75330200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr15:75322200-75333400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:75322200-75335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:75322200-75335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:75322200-75339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:75322400-75323600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:75322400-75323800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:75322400-75324200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:75322400-75328000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr15:75322400-75336800	Weak transcription	Primary T cells from cord blood	blood
29	chr15:75322400-75339200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:75322600-75323600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:75322600-75324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:75322600-75324400	Weak transcription	Small Intestine	intestine
33	chr15:75322600-75324600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:75322600-75324800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:75322600-75325000	Strong transcription	HepG2	liver
36	chr15:75322600-75325000	Enhancers	HUVEC	blood vessel
37	chr15:75322600-75326600	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr15:75322600-75328400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:75322600-75330200	Weak transcription	NH-A	brain
40	chr15:75322600-75338600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:75322800-75323600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:75322800-75323600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:75322800-75323600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr15:75322800-75323800	Genic enhancers	Fetal Muscle Leg	muscle
45	chr15:75322800-75323800	Genic enhancers	Spleen	Spleen
46	chr15:75322800-75324000	Strong transcription	Fetal Intestine Large	intestine
47	chr15:75322800-75324000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:75322800-75324200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:75322800-75324400	Weak transcription	Fetal Heart	heart
50	chr15:75322800-75324400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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