Variant report

Variant	rs540937495
Chromosome Location	chr6:119312029-119312030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340393	chr6:119311737-119316304	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3442213	chr6:119311747-119316306	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
2	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
3	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:119293200-119345400	Weak transcription	Lung	lung
7	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:119296800-119314600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:119299600-119314600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:119300800-119319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:119301000-119321800	Weak transcription	Placenta	Placenta
14	chr6:119301400-119313200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:119301400-119319200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:119302200-119313400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:119311400-119314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:119311400-119315800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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