Variant report

Variant	rs540939429
Chromosome Location	chr5:79954235-79954236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79781713..79786255-chr5:79948613..79954295,12	MCF-7	breast:
2	chr5:79948428..79952825-chr5:79952965..79955776,5	MCF-7	breast:
3	chr5:79949138..79951235-chr5:79952143..79954933,3	K562	blood:
4	chr5:79949138..79951235-chr5:79952143..79954241,3	K562	blood:

Variant related genes	Relation type
ENSG00000152380	Chromatin interaction
ENSG00000113318	Chromatin interaction
ENSG00000228716	Chromatin interaction
ENSG00000249042	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1792078	chr5:79953567-79962367	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv1831340	chr5:79953567-79962367	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv1851181	chr5:79953567-79962367	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79951200-79954800	Weak transcription	Ovary	ovary
2	chr5:79951200-79963200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:79951400-79956000	Weak transcription	Aorta	Aorta
4	chr5:79951400-79963200	Weak transcription	Right Ventricle	heart
5	chr5:79951600-79954400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:79951600-79954400	Weak transcription	Gastric	stomach
7	chr5:79951600-79955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:79951600-79955000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:79951600-79955200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:79951600-79959000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:79951600-79962600	Weak transcription	Esophagus	oesophagus
12	chr5:79951600-79963200	Weak transcription	Pancreas	Pancrea
13	chr5:79951600-79963400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:79951600-79963400	Weak transcription	Brain Germinal Matrix	brain
15	chr5:79951600-79963600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:79951600-79969200	Weak transcription	Stomach Mucosa	stomach
17	chr5:79951600-79972200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:79951600-80015600	Weak transcription	Small Intestine	intestine
19	chr5:79951800-79954400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:79951800-79954400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:79951800-79954800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:79951800-79955200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:79951800-79957600	Weak transcription	Fetal Brain Male	brain
24	chr5:79951800-79960200	Weak transcription	Colon Smooth Muscle	Colon
25	chr5:79951800-79964000	Weak transcription	Brain Substantia Nigra	brain
26	chr5:79951800-79982800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr5:79952000-79955600	Weak transcription	Fetal Lung	lung
28	chr5:79952000-79959800	Weak transcription	HMEC	breast
29	chr5:79952000-79963800	Weak transcription	Fetal Heart	heart
30	chr5:79952200-79954800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr5:79952200-79955800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr5:79952200-79956400	Strong transcription	Fetal Muscle Leg	muscle
33	chr5:79952200-79956400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr5:79952200-79964200	Weak transcription	Brain Angular Gyrus	brain
35	chr5:79952200-79964200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr5:79952200-79964200	Weak transcription	NHLF	lung
37	chr5:79952200-79975400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr5:79952400-79954400	Strong transcription	Adipose Nuclei	Adipose
39	chr5:79952400-79954400	Strong transcription	NHEK	skin
40	chr5:79952400-79955200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:79952400-79955400	Weak transcription	NHDF-Ad	bronchial
42	chr5:79952400-79956200	Strong transcription	Placenta	Placenta
43	chr5:79952400-79956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:79952400-79956600	Weak transcription	A549	lung
45	chr5:79952400-79956800	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr5:79952400-79958200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:79952400-79959800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:79952400-79963200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:79952400-79963400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:79952400-79965000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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