Variant report

Variant	rs540941201
Chromosome Location	chr17:59863195-59863196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59862782..59863461-chr3:64008914..64009596,2	MCF-7	breast:
2	chr17:59526831..59528449-chr17:59861163..59863891,2	MCF-7	breast:
3	chr17:59860602..59863477-chr17:59913344..59915633,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163636	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	nsv575841	chr17:59812748-59914681	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv908675	chr17:59835864-59937286	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
7	esv1794309	chr17:59861640-59907952	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59816800-59887800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:59820400-59877200	Weak transcription	NH-A	brain
3	chr17:59825800-59898400	Weak transcription	Thymus	Thymus
4	chr17:59844000-59882600	Weak transcription	NHLF	lung
5	chr17:59844600-59882600	Weak transcription	HMEC	breast
6	chr17:59847600-59883400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:59847800-59876200	Weak transcription	Osteobl	bone
8	chr17:59848400-59873600	Weak transcription	K562	blood
9	chr17:59848600-59874000	Weak transcription	Hela-S3	cervix
10	chr17:59848600-59875600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:59848800-59872600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr17:59848800-59882600	Weak transcription	NHEK	skin
13	chr17:59848800-59911200	Weak transcription	HUVEC	blood vessel
14	chr17:59849000-59869400	Weak transcription	HepG2	liver
15	chr17:59849400-59871600	Weak transcription	HSMM	muscle
16	chr17:59849400-59872200	Weak transcription	Fetal Thymus	thymus
17	chr17:59849400-59887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr17:59849800-59887200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr17:59850000-59865000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr17:59850000-59866000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:59850000-59869400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr17:59850000-59870800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr17:59850000-59871000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:59850000-59872200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr17:59850000-59873200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr17:59850000-59887000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr17:59850000-59887000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr17:59851200-59902600	Weak transcription	Fetal Stomach	stomach
29	chr17:59852600-59869400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr17:59852600-59898000	Weak transcription	Fetal Intestine Small	intestine
31	chr17:59853800-59869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:59854000-59866000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr17:59854000-59868600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr17:59854000-59873000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr17:59856400-59872800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr17:59856800-59868000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr17:59857000-59888600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr17:59857400-59866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr17:59857800-59868200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr17:59858000-59872800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:59858200-59866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr17:59858200-59869400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr17:59860000-59863600	Strong transcription	Dnd41	blood
44	chr17:59860200-59883200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr17:59860800-59868000	Weak transcription	A549	lung
46	chr17:59862000-59864000	Enhancers	Primary B cells from cord blood	blood
47	chr17:59862000-59869200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr17:59862000-59887200	Weak transcription	Fetal Kidney	kidney
49	chr17:59862600-59863800	Enhancers	GM12878-XiMat	blood
50	chr17:59863000-59863800	Enhancers	Primary B cells from peripheral blood	blood

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