Variant report

Variant	rs540945216
Chromosome Location	chr15:51852040-51852041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51829420..51832370-chr15:51850921..51852494,2	K562	blood:
2	chr15:51850776..51853114-chr15:51857190..51858738,2	K562	blood:
3	chr15:51830870..51833230-chr15:51850921..51853249,2	K562	blood:
4	chr15:51835902..51838646-chr15:51851787..51853381,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv457138	chr15:51838719-51890282	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv569406	chr15:51838719-51890282	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51776800-51855200	Weak transcription	Thymus	Thymus
2	chr15:51780400-51855800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:51781400-51863000	Weak transcription	HSMM	muscle
4	chr15:51787400-51855400	Weak transcription	Osteobl	bone
5	chr15:51794600-51861000	Weak transcription	Gastric	stomach
6	chr15:51809000-51854800	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:51816000-51861000	Weak transcription	Pancreas	Pancrea
8	chr15:51817800-51862200	Weak transcription	Fetal Brain Male	brain
9	chr15:51818200-51855400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:51818200-51861600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:51818400-51853400	Weak transcription	Lung	lung
12	chr15:51818400-51861200	Weak transcription	Fetal Stomach	stomach
13	chr15:51819400-51852600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:51819400-51853400	Weak transcription	Ovary	ovary
15	chr15:51819600-51853400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:51819600-51861400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:51819800-51863000	Weak transcription	Right Ventricle	heart
18	chr15:51824400-51854200	Weak transcription	Fetal Kidney	kidney
19	chr15:51824600-51855000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:51824600-51860600	Weak transcription	Brain Anterior Caudate	brain
21	chr15:51824600-51861000	Weak transcription	Left Ventricle	heart
22	chr15:51824800-51863200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:51826000-51853400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:51827000-51861600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:51827400-51859800	Weak transcription	Fetal Intestine Small	intestine
26	chr15:51828600-51861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:51828800-51868000	Weak transcription	Adipose Nuclei	Adipose
28	chr15:51828800-51868200	Weak transcription	Fetal Intestine Large	intestine
29	chr15:51829000-51853400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:51829000-51855200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:51829000-51856000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:51829000-51857000	Weak transcription	NHDF-Ad	bronchial
33	chr15:51829000-51859800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:51829000-51861000	Weak transcription	Fetal Lung	lung
35	chr15:51829000-51868800	Weak transcription	A549	lung
36	chr15:51829200-51861000	Weak transcription	Placenta	Placenta
37	chr15:51829400-51860600	Weak transcription	Fetal Brain Female	brain
38	chr15:51829400-51863200	Weak transcription	Dnd41	blood
39	chr15:51830000-51861000	Weak transcription	K562	blood
40	chr15:51831400-51868800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:51836400-51861400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:51836600-51853400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:51836800-51858000	Weak transcription	Liver	Liver
44	chr15:51836800-51869000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr15:51839400-51868600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:51846600-51861000	Weak transcription	HepG2	liver
47	chr15:51849600-51861000	Weak transcription	Spleen	Spleen
48	chr15:51850600-51861000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:51850800-51867400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:51851400-51868200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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