Variant report

Variant	rs540954143
Chromosome Location	chr2:100689048-100689049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
2	chr2:100679600-100689600	Weak transcription	Spleen	Spleen
3	chr2:100683000-100698200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:100683200-100719600	Weak transcription	Brain Germinal Matrix	brain
5	chr2:100684400-100690600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:100686000-100698400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr2:100687000-100689200	Enhancers	Fetal Thymus	thymus
8	chr2:100687400-100690400	Weak transcription	Fetal Intestine Small	intestine
9	chr2:100688000-100689200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:100688400-100689200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:100688400-100690000	Enhancers	Right Ventricle	heart
12	chr2:100688400-100696800	Strong transcription	Primary B cells from cord blood	blood
13	chr2:100688400-100710800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:100688600-100689600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:100688600-100690000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:100688600-100690000	Weak transcription	Fetal Lung	lung
17	chr2:100688600-100690000	Genic enhancers	Dnd41	blood
18	chr2:100688800-100689800	Enhancers	Lung	lung
19	chr2:100688800-100690200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:100688800-100696400	Weak transcription	Fetal Brain Male	brain
21	chr2:100689000-100689200	Genic enhancers	Fetal Brain Female	brain
22	chr2:100689000-100689200	Enhancers	Ovary	ovary
23	chr2:100689000-100689400	Flanking Active TSS	Fetal Heart	heart
24	chr2:100689000-100689800	Weak transcription	Left Ventricle	heart
25	chr2:100689000-100689800	Weak transcription	Right Atrium	heart
26	chr2:100689000-100691200	Strong transcription	Primary hematopoietic stem cells	blood
27	chr2:100689000-100691400	Enhancers	Gastric	stomach
28	chr2:100689000-100691600	Weak transcription	Primary T cells from cord blood	blood
29	chr2:100689000-100693800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr2:100689000-100694400	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links