Variant report

Variant	rs540966060
Chromosome Location	chr3:178877644-178877645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178873426..178876051-chr3:178876789..178878414,2	K562	blood:
2	chr3:178872310..178876129-chr3:178876945..178878643,3	MCF-7	breast:
3	chr3:178876883..178879796-chr3:178884449..178887188,2	MCF-7	breast:
4	chr3:178867742..178870161-chr3:178876132..178878163,2	MCF-7	breast:
5	chr3:178876264..178878992-chr3:178879301..178882016,3	K562	blood:
6	chr3:178873426..178875261-chr3:178876713..178879813,4	K562	blood:

Variant related genes	Relation type
ENSG00000201957	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv461026	chr3:178661814-178886609	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv592649	chr3:178661814-178886609	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv1841799	chr3:178739594-178884337	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1003540	chr3:178875803-178886293	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1010571	chr3:178876965-178888153	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178867200-178878200	Weak transcription	Gastric	stomach
2	chr3:178867600-178878200	Weak transcription	Pancreas	Pancrea
3	chr3:178867600-178882400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:178867600-178883400	Weak transcription	Stomach Mucosa	stomach
5	chr3:178867800-178878000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:178867800-178878200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:178867800-178878200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:178867800-178900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:178868000-178878200	Weak transcription	Right Atrium	heart
10	chr3:178868000-178892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:178868600-178881400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:178868600-178893000	Weak transcription	Aorta	Aorta
13	chr3:178869200-178898000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:178869400-178887200	Weak transcription	Fetal Brain Male	brain
15	chr3:178869800-178877800	Weak transcription	Ovary	ovary
16	chr3:178869800-178878200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:178869800-178883400	Weak transcription	Liver	Liver
18	chr3:178870000-178880600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:178870800-178896400	Weak transcription	K562	blood
20	chr3:178872400-178878200	Weak transcription	Left Ventricle	heart
21	chr3:178872400-178883200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:178873800-178879200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:178874000-178877800	Enhancers	Primary T cells from cord blood	blood
24	chr3:178874000-178880400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr3:178874400-178880200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:178874400-178880600	Weak transcription	HSMM	muscle
27	chr3:178874600-178883000	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:178874800-178877800	Weak transcription	Psoas Muscle	Psoas
29	chr3:178874800-178878200	Weak transcription	Adipose Nuclei	Adipose
30	chr3:178874800-178878200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:178874800-178878800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:178874800-178878800	Weak transcription	NHEK	skin
33	chr3:178874800-178883400	Weak transcription	Fetal Kidney	kidney
34	chr3:178874800-178888600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:178875200-178879200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr3:178875400-178880400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr3:178875600-178879400	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr3:178875800-178879400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:178876000-178879000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:178876400-178878600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:178876800-178877800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr3:178876800-178878200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:178876800-178878200	Weak transcription	NHDF-Ad	bronchial
44	chr3:178876800-178884200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:178877000-178878600	Strong transcription	Primary B cells from cord blood	blood
46	chr3:178877000-178883400	Weak transcription	Fetal Heart	heart
47	chr3:178877200-178880400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:178877400-178879000	Enhancers	Right Ventricle	heart
49	chr3:178877400-178897800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:178877600-178878600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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