Variant report

Variant	rs540981286
Chromosome Location	chr12:48710096-48710097
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758307	chr12:48429702-48825499	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759898	chr12:48429702-48825499	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv8971	chr12:48536526-48758501	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv34439	chr12:48541757-48779562	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv2757502	chr12:48547128-48779562	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv899062	chr12:48658212-48711867	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv899063	chr12:48664989-48713768	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv899064	chr12:48664989-48721832	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv899065	chr12:48667019-48711867	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv899066	chr12:48667019-48713768	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	nsv469369	chr12:48675783-48711867	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv469370	chr12:48675783-48711867	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv469372	chr12:48675783-48711867	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv470290	chr12:48675783-48711867	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv558791	chr12:48675783-48711867	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv826362	chr12:48693048-48768853	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
19	nsv558792	chr12:48703203-48710624	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv558793	chr12:48704474-48710427	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1010928	chr12:48706486-48711554	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3500718	chr12:48707685-48712083	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3507475	chr12:48707785-48712083	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3507476	chr12:48707785-48712083	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv3500707	chr12:48708162-48711247	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv17416	chr12:48708280-48710660	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv994792	chr12:48708526-48710702	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
28	nsv558794	chr12:48708568-48710124	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
29	nsv558795	chr12:48708568-48710427	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
30	nsv558796	chr12:48708568-48710459	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
31	nsv558797	chr12:48708568-48710563	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
32	nsv558798	chr12:48708568-48710624	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
33	nsv53338	chr12:48708574-48710684	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
34	esv3500730	chr12:48708914-48711247	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
35	esv3500696	chr12:48708914-48711291	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
36	esv20323	chr12:48709293-48711033	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
37	nsv558800	chr12:48709423-48710124	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
38	nsv558801	chr12:48709423-48710272	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
39	nsv558802	chr12:48709423-48710427	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
40	nsv558803	chr12:48709423-48710459	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
41	nsv558804	chr12:48709423-48710563	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
42	nsv558805	chr12:48709423-48710624	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
43	nsv558806	chr12:48709548-48710124	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
44	nsv558807	chr12:48709548-48710190	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
45	nsv558808	chr12:48709548-48710427	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
46	nsv558809	chr12:48709548-48710459	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
47	nsv558810	chr12:48709548-48710563	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
48	nsv558811	chr12:48709548-48710624	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
49	nsv558812	chr12:48709548-48711867	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
50	nsv558813	chr12:48709654-48710427	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48709600-48710200	Weak transcription	Stomach Smooth Muscle	stomach

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