Variant report

Variant rs540982908
Chromosome Location chr7:27169939-27169940
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27163200-27170600 Strong transcription Primary hematopoietic stem cells short term culture blood
2 chr7:27167800-27171000 Active TSS Duodenum Smooth Muscle Duodenum
3 chr7:27168800-27170800 Active TSS Esophagus oesophagus
4 chr7:27168800-27170800 Active TSS Lung lung
5 chr7:27168800-27171400 Active TSS Fetal Kidney kidney
6 chr7:27168800-27171800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
7 chr7:27169000-27170600 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
8 chr7:27169000-27170600 Active TSS Pancreas Pancrea
9 chr7:27169000-27170800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
10 chr7:27169000-27170800 Bivalent/Poised TSS Fetal Lung lung
11 chr7:27169000-27171200 Active TSS Aorta Aorta
12 chr7:27169000-27171400 Active TSS Right Atrium heart
13 chr7:27169200-27170600 Active TSS Rectal Mucosa Donor 29 rectum
14 chr7:27169200-27170800 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr7:27169200-27170800 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr7:27169200-27170800 Active TSS Breast Myoepithelial Primary Cells Breast
17 chr7:27169200-27170800 Active TSS Fetal Stomach stomach
18 chr7:27169200-27170800 Active TSS HSMM muscle
19 chr7:27169200-27170800 Bivalent/Poised TSS NH-A brain
20 chr7:27169200-27170800 Active TSS NHDF-Ad bronchial
21 chr7:27169400-27170000 Bivalent Enhancer H1 Cell Line embryonic stem cell
22 chr7:27169400-27170000 Bivalent/Poised TSS Right Ventricle heart
23 chr7:27169400-27170200 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
24 chr7:27169400-27170200 Flanking Active TSS HMEC breast
25 chr7:27169400-27170400 Flanking Active TSS Primary hematopoietic stem cells blood
26 chr7:27169400-27170600 Active TSS Ovary ovary
27 chr7:27169400-27170800 Active TSS Colon Smooth Muscle Colon
28 chr7:27169400-27170800 Active TSS Duodenum Mucosa Duodenum
29 chr7:27169400-27170800 Bivalent/Poised TSS Pancreatic Islets Pancreatic Islet
30 chr7:27169400-27170800 Bivalent/Poised TSS Placenta Amnion Placenta Amnion
31 chr7:27169400-27171000 Active TSS Psoas Muscle Psoas
32 chr7:27169400-27171000 Active TSS HSMMtube muscle
33 chr7:27169400-27171200 Active TSS A549 lung
34 chr7:27169600-27170000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr7:27169600-27170200 Weak transcription Stomach Mucosa stomach
36 chr7:27169600-27170400 Active TSS Primary T helper cells fromperipheralblood blood
37 chr7:27169600-27170600 Active TSS Fetal Adrenal Gland Adrenal Gland
38 chr7:27169600-27170800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr7:27169600-27170800 Active TSS Primary T regulatory cells fromperipheralblood blood
40 chr7:27169600-27170800 Active TSS Primary Natural Killer cells fromperipheralblood blood
41 chr7:27169600-27170800 Active TSS Fetal Intestine Large intestine
42 chr7:27169600-27170800 Active TSS Gastric stomach
43 chr7:27169600-27170800 Bivalent/Poised TSS Left Ventricle heart
44 chr7:27169600-27170800 Active TSS Small Intestine intestine
45 chr7:27169600-27170800 Active TSS Stomach Smooth Muscle stomach
46 chr7:27169600-27170800 Active TSS HepG2 liver
47 chr7:27169600-27170800 Active TSS NHEK skin
48 chr7:27169600-27171000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr7:27169600-27171000 Active TSS Rectal Smooth Muscle rectum
50 chr7:27169600-27171000 Active TSS Thymus Thymus

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