Variant report

Variant	rs540988986
Chromosome Location	chr14:25258780-25258781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25257418..25259625-chr14:25262130..25263668,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1046542	chr14:25244806-25267208	Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1045403	chr14:25249822-25271815	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv564063	chr14:25253343-25262952	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv564064	chr14:25257780-25262886	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25255400-25261800	Enhancers	Fetal Lung	lung
2	chr14:25256800-25258800	Weak transcription	Fetal Brain Male	brain
3	chr14:25258000-25259200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:25258200-25258800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr14:25258200-25259000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:25258200-25259000	Enhancers	Fetal Intestine Small	intestine
7	chr14:25258200-25259000	Enhancers	Rectal Smooth Muscle	rectum
8	chr14:25258200-25259200	Enhancers	Colon Smooth Muscle	Colon
9	chr14:25258200-25259200	Enhancers	Duodenum Mucosa	Duodenum
10	chr14:25258200-25259200	Enhancers	Fetal Muscle Leg	muscle
11	chr14:25258200-25259200	Enhancers	Fetal Stomach	stomach
12	chr14:25258200-25259200	Enhancers	Left Ventricle	heart
13	chr14:25258200-25259800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:25258400-25259000	Enhancers	Brain Germinal Matrix	brain
15	chr14:25258400-25259200	Enhancers	Adipose Nuclei	Adipose
16	chr14:25258400-25259200	Enhancers	Right Ventricle	heart
17	chr14:25258400-25259200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:25258400-25260000	Enhancers	Stomach Mucosa	stomach
19	chr14:25258600-25259400	Enhancers	Fetal Intestine Large	intestine
20	chr14:25258600-25259800	Bivalent Enhancer	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links