Variant report

Variant	rs540994933
Chromosome Location	chr11:120395916-120395917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120390421..120392363-chr11:120394068..120396369,3	MCF-7	breast:
2	chr11:120380328..120382338-chr11:120394960..120397236,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1051115	chr11:120376808-120446434	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv556475	chr11:120387828-120396485	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1036388	chr11:120395104-120427135	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120388400-120397600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:120388400-120397800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120388800-120403400	Weak transcription	Right Atrium	heart
4	chr11:120393800-120396400	Bivalent Enhancer	Fetal Intestine Small	intestine
5	chr11:120394000-120397600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:120394200-120398000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:120394200-120398000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:120394400-120397800	Weak transcription	Ovary	ovary
9	chr11:120394400-120398200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:120394600-120396000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:120394600-120397000	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:120394600-120397600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:120394600-120397600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:120394600-120397800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:120394600-120397800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:120394800-120397800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:120395000-120398400	Enhancers	Fetal Intestine Large	intestine
18	chr11:120395000-120399000	Weak transcription	Spleen	Spleen
19	chr11:120395400-120397800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:120395400-120397800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:120395600-120396600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:120395600-120399000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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