Variant report

Variant	rs541013870
Chromosome Location	chr5:68320536-68320537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:47749473..47749973-chr5:68319722..68320581,2	MCF-7	breast:
2	chr5:68312049..68314191-chr5:68317998..68320759,3	K562	blood:
3	chr5:68319705..68320603-chr5:68630318..68631248,3	K562	blood:
4	chr5:68319643..68320584-chr5:68379379..68380063,3	K562	blood:
5	chr5:68319293..68321703-chr5:68323264..68324934,2	K562	blood:
6	chr5:68320167..68322088-chr5:68342197..68344022,2	K562	blood:
7	chr5:68312049..68313667-chr5:68319112..68320759,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC125-13	chr5:68320037-68320857	NONHSAT101881

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598413	chr5:68306058-68320702	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3471635	chr5:68319062-68321290	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3471636	chr5:68319062-68321290	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv17753	chr5:68319571-68320758	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv598418	chr5:68319593-68320598	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv598419	chr5:68319593-68320650	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv598420	chr5:68319593-68320702	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv598421	chr5:68319593-68321247	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv598423	chr5:68319687-68320650	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv598424	chr5:68319687-68320702	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320200-68320800	Enhancers	K562	blood
2	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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