Variant report

Variant	rs541050825
Chromosome Location	chr5:150969739-150969740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:150962459..150965963-chr5:150966583..150970209,3	MCF-7	breast:
2	chr5:150965412..150967281-chr5:150969711..150971989,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5068	chr5:150968232-150979554	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150961800-150970400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:150964400-150975000	Weak transcription	HSMMtube	muscle
3	chr5:150966000-151002000	Weak transcription	Right Atrium	heart
4	chr5:150966200-150969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:150966200-150972400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:150968000-150970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:150968600-150970400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr5:150968600-150971200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:150968600-150971200	Active TSS	Esophagus	oesophagus
10	chr5:150968800-150969800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:150968800-150970000	Enhancers	Adipose Nuclei	Adipose
12	chr5:150968800-150973800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:150969000-150969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:150969000-150971000	Active TSS	HMEC	breast
15	chr5:150969200-150970000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:150969200-150970200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr5:150969200-150971000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:150969200-150976200	Weak transcription	Spleen	Spleen
19	chr5:150969400-150970200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:150969400-150979400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:150969600-150969800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:150969600-150969800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:150969600-150969800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:150969600-150970000	Enhancers	HSMM	muscle
25	chr5:150969600-150970200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:150969600-150970200	Flanking Active TSS	NHEK	skin
27	chr5:150969600-150970400	Active TSS	Fetal Kidney	kidney
28	chr5:150969600-150970400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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