Variant report

Variant	rs541081585
Chromosome Location	chr11:75868543-75868544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1051472	chr11:75851880-75922608	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1037940	chr11:75855316-75909619	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897927	chr11:75866999-75908083	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75833400-75872800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:75862800-75869200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:75864400-75871800	Weak transcription	Right Atrium	heart
4	chr11:75864600-75872600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:75865000-75868800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:75865000-75869000	Weak transcription	Pancreas	Pancrea
7	chr11:75865000-75869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:75865000-75876000	Weak transcription	Spleen	Spleen
9	chr11:75865800-75870400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:75867400-75869000	Weak transcription	Adipose Nuclei	Adipose
11	chr11:75867800-75875200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:75868000-75868800	Enhancers	Fetal Heart	heart
13	chr11:75868000-75869200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:75868000-75869800	Bivalent Enhancer	Fetal Stomach	stomach
15	chr11:75868200-75868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:75868200-75869600	Enhancers	Fetal Lung	lung
17	chr11:75868200-75870400	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr11:75868400-75869200	Bivalent Enhancer	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links