Variant report

Variant	rs541095910
Chromosome Location	chr10:23632965-23632966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:23632840-23632990	HCPEpiC	choroid plexus:	n/a	n/a
2	MAX	chr10:23632708-23633724	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
3	YY1	chr10:23632773-23633063	ECC-1	luminal epithelium:	n/a	chr10:23633051-23633062
4	EGR1	chr10:23632797-23633222	ECC-1	luminal epithelium:	n/a	chr10:23633050-23633060 chr10:23633039-23633052 chr10:23633035-23633057 chr10:23633041-23633051 chr10:23633039-23633052
5	POLR2A	chr10:23632721-23633093	H1-neurons	neurons:	n/a	n/a
6	EGR1	chr10:23632876-23633056	K562	blood:	n/a	chr10:23633039-23633052 chr10:23633041-23633051 chr10:23633039-23633052
7	ZNF143	chr10:23632881-23633449	H1-hESC	embryonic stem cell:	n/a	chr10:23633048-23633058
8	POLR2A	chr10:23632612-23633070	U87	brain:	n/a	n/a
9	EGR1	chr10:23632816-23633102	ECC-1	luminal epithelium:	n/a	chr10:23633050-23633060 chr10:23633039-23633052 chr10:23633035-23633057 chr10:23633041-23633051 chr10:23633039-23633052
10	ZNF263	chr10:23632432-23633834	HEK293-T-REx	kidney:	n/a	n/a
11	YY1	chr10:23632734-23633039	H1-hESC	embryonic stem cell:	n/a	n/a
12	MXI1	chr10:23632818-23633087	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr10:23632860-23633010	SK-N-SH_RA	brain:	n/a	n/a
14	MAX	chr10:23632706-23633078	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
15	YY1	chr10:23632794-23633019	GM12892	blood:	n/a	n/a
16	CHD2	chr10:23632845-23633445	H1-hESC	embryonic stem cell:	n/a	n/a
17	YY1	chr10:23632721-23633039	H1-hESC	embryonic stem cell:	n/a	n/a
18	YY1	chr10:23632697-23633040	SK-N-SH_RA	brain:	n/a	n/a
19	YY1	chr10:23632704-23633067	SK-N-SH	brain:	n/a	chr10:23633051-23633062
20	EGR1	chr10:23632911-23633046	K562	blood:	n/a	n/a
21	SIN3AK20	chr10:23632835-23633065	H1-hESC	embryonic stem cell:	n/a	n/a
22	TAF1	chr10:23632754-23633024	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chr10:23632860-23633010	SAEC	small airway:	n/a	n/a
24	POLR2A	chr10:23632557-23633058	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr10:23632940-23632965	NHEK	skin:	n/a	n/a
26	MAX	chr10:23632824-23633653	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
27	YY1	chr10:23632755-23633041	SK-N-SH_RA	brain:	n/a	n/a
28	SIN3AK20	chr10:23632738-23633093	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr10:23632771-23633765	H1-neurons	neurons:	n/a	n/a
30	SIN3A	chr10:23632621-23633849	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr10:23632900-23633050	HMEC	breast:	n/a	n/a
32	CTCF	chr10:23632911-23632971	MCF-7	breast:	n/a	n/a
33	SIN3AK20	chr10:23632785-23633060	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OTUD1-1	chr10:23632886-23633019	ENSG00000224215.1

Variant related genes	Relation type
C10orf67	TF binding region
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3321964	chr10:23632396-23633894	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23630400-23633200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:23630400-23633200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:23630600-23633200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:23631400-23633400	Enhancers	Fetal Heart	heart
5	chr10:23632000-23633400	Enhancers	Lung	lung
6	chr10:23632000-23634000	Active TSS	Brain Hippocampus Middle	brain
7	chr10:23632200-23633600	Active TSS	Brain Angular Gyrus	brain
8	chr10:23632200-23633800	Weak transcription	Hela-S3	cervix
9	chr10:23632200-23634000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:23632200-23634000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:23632400-23633000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:23632400-23633000	Flanking Active TSS	HMEC	breast
13	chr10:23632400-23633000	Flanking Active TSS	NHEK	skin
14	chr10:23632400-23633200	Active TSS	Brain Germinal Matrix	brain
15	chr10:23632400-23633400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:23632400-23633400	Active TSS	Duodenum Mucosa	Duodenum
17	chr10:23632400-23633400	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr10:23632400-23633400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
19	chr10:23632400-23633400	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr10:23632400-23633600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:23632400-23633800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:23632400-23633800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:23632400-23633800	Active TSS	Fetal Brain Female	brain
24	chr10:23632400-23634000	Active TSS	Brain Cingulate Gyrus	brain
25	chr10:23632400-23634000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:23632600-23633000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:23632600-23633000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
28	chr10:23632600-23633000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr10:23632600-23633000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr10:23632600-23633000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:23632600-23633000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
32	chr10:23632600-23633000	Bivalent/Poised TSS	Aorta	Aorta
33	chr10:23632600-23633000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
34	chr10:23632600-23633000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr10:23632600-23633000	Flanking Bivalent TSS/Enh	Placenta	Placenta
36	chr10:23632600-23633000	Flanking Active TSS	Left Ventricle	heart
37	chr10:23632600-23633200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:23632600-23633200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:23632600-23633200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:23632600-23633200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr10:23632600-23633400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:23632600-23633400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:23632600-23633400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:23632600-23633400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:23632600-23633400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:23632600-23633400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:23632600-23633400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:23632600-23633400	Active TSS	Colonic Mucosa	Colon
49	chr10:23632600-23633400	Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr10:23632600-23633400	Active TSS	HSMM	muscle

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