Variant report

Variant	rs541098642
Chromosome Location	chr6:150336311-150336312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150283429..150285848-chr6:150336024..150337757,2	MCF-7	breast:
2	chr6:150274811..150275321-chr6:150336040..150336549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111981	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970176	chr6:150319173-150343329	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv886766	chr6:150335407-150364009	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150335200-150336600	Bivalent Enhancer	Fetal Brain Male	brain
2	chr6:150335200-150340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150335400-150336800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr6:150335600-150336600	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr6:150335800-150336400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
6	chr6:150335800-150336400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:150335800-150336400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150335800-150336400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:150335800-150336400	Bivalent Enhancer	Liver	Liver
10	chr6:150335800-150336400	Bivalent Enhancer	Fetal Stomach	stomach
11	chr6:150335800-150336600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:150335800-150336600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:150335800-150336600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:150335800-150336600	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr6:150335800-150336800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
16	chr6:150335800-150336800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:150335800-150336800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr6:150335800-150336800	Bivalent Enhancer	Placenta	Placenta
19	chr6:150335800-150336800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
20	chr6:150335800-150337000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr6:150336000-150336600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
22	chr6:150336000-150336600	Enhancers	Right Atrium	heart
23	chr6:150336000-150336600	Flanking Active TSS	HMEC	breast
24	chr6:150336000-150336800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
25	chr6:150336000-150336800	Bivalent Enhancer	Esophagus	oesophagus
26	chr6:150336200-150336400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
27	chr6:150336200-150336400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:150336200-150336400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
29	chr6:150336200-150336400	Flanking Active TSS	Right Ventricle	heart
30	chr6:150336200-150336600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
31	chr6:150336200-150336600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
32	chr6:150336200-150336600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:150336200-150336600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:150336200-150336600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:150336200-150336600	Enhancers	Pancreas	Pancrea
36	chr6:150336200-150336600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
37	chr6:150336200-150336600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
38	chr6:150336200-150336600	Bivalent/Poised TSS	NHEK	skin
39	chr6:150336200-150336800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:150336200-150336800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:150336200-150336800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:150336200-150336800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:150336200-150336800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:150336200-150336800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
45	chr6:150336200-150336800	Bivalent Enhancer	Left Ventricle	heart
46	chr6:150336200-150336800	Enhancers	Lung	lung
47	chr6:150336200-150336800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr6:150336200-150336800	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr6:150336200-150337000	Flanking Active TSS	K562	blood

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